PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018985.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HRT-like

Protein Properties

Length: 1657aa MW: 184007 Da PI: 8.071

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018985.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	52.9	6e-17	270	299	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+ +dGsvC++ Pv+gR+RC+eHKGmR PCP018985.1 270 ICGADVGDGSVCRTAPVPGRQRCAEHKGMR 299 8****************************9 PP
2	HRT-like	34.8	2.7e-11	329	351	2	24
HRT-like 2 CGviledGsvCkrqPvkgRKRCe 24 CG+il dGs+C r+P++gRKRC+ PCP018985.1 329 CGFILADGSPCGRHPIQGRKRCA 351 **********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1657 aa Download sequence
MEAGNSTVAV SRLKREDCER PKNDSRFSNW KILVGPSDWE DHSLGKEGAE RYRVHNLPKK 60 ESPGVYELGV SGCSSLGRES GKLDPGCVVP VYLGQADNAR TRLQQYGRSG AHLGNGSSTD 120 HPTDCVRREM GRGLFEDILS RGYPIVYRWA PMENKSDALK TENQLLDTYD YAWNRTNNGA 180 RRPDDVHRKL KNISSSTTQR TDIAQELLPS SQKKVGIRIE SSKPISTGDK FGAYDDREIH 240 NSPCRVFKLG RAQPRLVSNR SITEENTSII CGADVGDGSV CRTAPVPGRQ RCAEHKGMRA 300 KGSTRVGISN SNVDSQYRFI SNHDSVEPCG FILADGSPCG RHPIQGRKRC ASSGAQAVDL 360 EPEAAGACTA LEDRGRVCGG HTPSGEDWKW AAVRPRDRVV VGETVVIGNN VSILHHVTLG 420 GTGKVGGDRH PKIGNGVLIG ASASILGNVK IGEGAKIGAG SVVLIDVPPR TTAVGNPTSY 480 FCILCSPLIS VIPRASMDPA KVLETLYTFP VEGILSSVAS LAAQEISLFR GFKKELTKLR 540 QSVFAIQDFL GDVSFQPRQR GKAVEDWVKR LKEVAHDADD VLEDINYEVL RRKVEIQNHM 600 KKKVLNFFSL SNPILFRQKM AHKIKNINAS LAALKSEAPF IGLVAKTVDQ TPPGMGNRET 660 VSSFGHDEKI IGREKIVSDI IATLIESKNQ EKYLSVKAIV GMGGLGKTTL ARSIFSDDAI 720 GGHFVEKMWV CVSNTFEVNS ILNRMLESLN SNGTGVISRE ALLNKLKERL TGKRYILILD 780 DVWNEDDKLW SDFTSCLSRL NSAPGSIAIV TTRSAKVASI TETKTMPRCY LENLSVDDCW 840 SILKSEAIPN GASPLDPTQE NIGRAIAAKC VGVPLVAKVL GSVMRSSDWL LILENEIWQL 900 PKTEDRIMSV LKLSFDNLKS PSLKQCFAYC SIFKKDFQIE RDDLVQFWMA QGYLLSSRTM 960 SMEDIGNEYF NILLHNSLFQ DAGEDKYGII TDCKMHDLVH DLAVEVFKSE SLTRGLDQMD 1020 DDEIEIQHVA HISSTTIERI PQGSIRKLRS LFVDCEVPSN LFERFRGLRM LNLSETKIEE 1080 LPSSIGKLKR LRYLNIFFTR IKELPKSIGK LYNLQTLQMY TNMLETFPKE MENLINLRHV 1140 DFKDVKVPFG MTRLTHLQTL PSFILDRARR HRLDELGGLN ELKGKLVIGS LKFVRDKEEA 1200 MKSKLVEKAN LRKLILKWGK KRNGSFLDED ILEGLQPHRN LESLTIEEFK GTKFASWMMR 1260 NCRVTNLRHL RIRSCEKLAS LCCGLEYCPS LETMKIKNCG NLESFQISPS QSLQVLRIED 1320 CPKLRCTSIQ SLPSLRDLVI ERCTTLEGDL SLNGCTSLRE LRIEDCDGFI SILSGLHSCT 1380 SLRKLDIGKC RNLRTLSGHG LQTPVSLERM GICDCPNLEA IPSLDNLTSL TVLIISGCDG 1440 LISLPSGLAS CTSLTHLDVS NCLNLEAISS LDNLTSLAEL SVNYCDNLIS LADHNVSSLQ 1500 SLSSLDLSYC GKLQYLPKGL HSLSRLEELC IGAFCQELDS FPDFQVPSKL KGLTLHGWPK 1560 LKSLPQQIQH SASLTMLEIW NFDGLEALPE WLGNLTSLTR LEIGQCKNLM YLPTVEAMQR 1620 LTKLHALGII GCPQLKERCA KDSGPEWPKI SHIPFPG

Sequence ? help Back to Top

Protein Sequence Length: 1657 aa Download sequence

MEAGNSTVAV SRLKREDCER PKNDSRFSNW KILVGPSDWE DHSLGKEGAE RYRVHNLPKK  60
ESPGVYELGV SGCSSLGRES GKLDPGCVVP VYLGQADNAR TRLQQYGRSG AHLGNGSSTD  120
HPTDCVRREM GRGLFEDILS RGYPIVYRWA PMENKSDALK TENQLLDTYD YAWNRTNNGA  180
RRPDDVHRKL KNISSSTTQR TDIAQELLPS SQKKVGIRIE SSKPISTGDK FGAYDDREIH  240
NSPCRVFKLG RAQPRLVSNR SITEENTSII CGADVGDGSV CRTAPVPGRQ RCAEHKGMRA  300
KGSTRVGISN SNVDSQYRFI SNHDSVEPCG FILADGSPCG RHPIQGRKRC ASSGAQAVDL  360
EPEAAGACTA LEDRGRVCGG HTPSGEDWKW AAVRPRDRVV VGETVVIGNN VSILHHVTLG  420
GTGKVGGDRH PKIGNGVLIG ASASILGNVK IGEGAKIGAG SVVLIDVPPR TTAVGNPTSY  480
FCILCSPLIS VIPRASMDPA KVLETLYTFP VEGILSSVAS LAAQEISLFR GFKKELTKLR  540
QSVFAIQDFL GDVSFQPRQR GKAVEDWVKR LKEVAHDADD VLEDINYEVL RRKVEIQNHM  600
KKKVLNFFSL SNPILFRQKM AHKIKNINAS LAALKSEAPF IGLVAKTVDQ TPPGMGNRET  660
VSSFGHDEKI IGREKIVSDI IATLIESKNQ EKYLSVKAIV GMGGLGKTTL ARSIFSDDAI  720
GGHFVEKMWV CVSNTFEVNS ILNRMLESLN SNGTGVISRE ALLNKLKERL TGKRYILILD  780
DVWNEDDKLW SDFTSCLSRL NSAPGSIAIV TTRSAKVASI TETKTMPRCY LENLSVDDCW  840
SILKSEAIPN GASPLDPTQE NIGRAIAAKC VGVPLVAKVL GSVMRSSDWL LILENEIWQL  900
PKTEDRIMSV LKLSFDNLKS PSLKQCFAYC SIFKKDFQIE RDDLVQFWMA QGYLLSSRTM  960
SMEDIGNEYF NILLHNSLFQ DAGEDKYGII TDCKMHDLVH DLAVEVFKSE SLTRGLDQMD  1020
DDEIEIQHVA HISSTTIERI PQGSIRKLRS LFVDCEVPSN LFERFRGLRM LNLSETKIEE  1080
LPSSIGKLKR LRYLNIFFTR IKELPKSIGK LYNLQTLQMY TNMLETFPKE MENLINLRHV  1140
DFKDVKVPFG MTRLTHLQTL PSFILDRARR HRLDELGGLN ELKGKLVIGS LKFVRDKEEA  1200
MKSKLVEKAN LRKLILKWGK KRNGSFLDED ILEGLQPHRN LESLTIEEFK GTKFASWMMR  1260
NCRVTNLRHL RIRSCEKLAS LCCGLEYCPS LETMKIKNCG NLESFQISPS QSLQVLRIED  1320
CPKLRCTSIQ SLPSLRDLVI ERCTTLEGDL SLNGCTSLRE LRIEDCDGFI SILSGLHSCT  1380
SLRKLDIGKC RNLRTLSGHG LQTPVSLERM GICDCPNLEA IPSLDNLTSL TVLIISGCDG  1440
LISLPSGLAS CTSLTHLDVS NCLNLEAISS LDNLTSLAEL SVNYCDNLIS LADHNVSSLQ  1500
SLSSLDLSYC GKLQYLPKGL HSLSRLEELC IGAFCQELDS FPDFQVPSKL KGLTLHGWPK  1560
LKSLPQQIQH SASLTMLEIW NFDGLEALPE WLGNLTSLTR LEIGQCKNLM YLPTVEAMQR  1620
LTKLHALGII GCPQLKERCA KDSGPEWPKI SHIPFPG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1212	1222	RKLILKWGKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	7e-75	HRT-like family protein