PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018524.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 434aa MW: 48247 Da PI: 6.9475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018524.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.6	4.5e-48	17	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 + pGfrF+Ptdeel+++yLk+k+eg ++ evi+evdi+++eP dLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s + PCP018524.1 17 MFPGFRFSPTDEELISYYLKNKLEGPApGKTVEVISEVDICNFEPCDLPaKSIIQSDNEWFFFSPRGRKYPHGSQSRRATEFGYWKATGKERNVKS-G 113 579********************986455589***********767778899**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+k+tLvf+ grapkge+t+W+mhey + PCP018524.1 114 SNVVGTKRTLVFHVGRAPKGERTEWIMHEYCM 145 9***************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MDAVSKDAQL SIAAFSMFPG FRFSPTDEEL ISYYLKNKLE GPAPGKTVEV ISEVDICNFE 60 PCDLPAKSII QSDNEWFFFS PRGRKYPHGS QSRRATEFGY WKATGKERNV KSGSNVVGTK 120 RTLVFHVGRA PKGERTEWIM HEYCMNDKSQ DSMVVCRLRK NSEFRLNDTP NRGSSSQSPL 180 STMHKGESAV SEIGNDQGDK AVECSSKKST SSHDSQSIEQ IDSASDTYQK LVTDATQADS 240 TGHQKGSDDE DFYAEILNDD IININLDESL VPAAHMMPVV ANNSEAEHQS QQHMQDTLSQ 300 AVPFQGTSNR RIYLRKRKEK FRAESQPKAL VNRMDDRHAL IYVLFVFLVL LAVFVSNFCF 360 PDVAGSVSAV LGKILASKKH HISPLPLRKG EGRVRWQDTG SAQGFGEVWG EGIGKGLRFG 420 GRGRGDDGEA RDCQ

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MDAVSKDAQL SIAAFSMFPG FRFSPTDEEL ISYYLKNKLE GPAPGKTVEV ISEVDICNFE  60
PCDLPAKSII QSDNEWFFFS PRGRKYPHGS QSRRATEFGY WKATGKERNV KSGSNVVGTK  120
RTLVFHVGRA PKGERTEWIM HEYCMNDKSQ DSMVVCRLRK NSEFRLNDTP NRGSSSQSPL  180
STMHKGESAV SEIGNDQGDK AVECSSKKST SSHDSQSIEQ IDSASDTYQK LVTDATQADS  240
TGHQKGSDDE DFYAEILNDD IININLDESL VPAAHMMPVV ANNSEAEHQS QQHMQDTLSQ  300
AVPFQGTSNR RIYLRKRKEK FRAESQPKAL VNRMDDRHAL IYVLFVFLVL LAVFVSNFCF  360
PDVAGSVSAV LGKILASKKH HISPLPLRKG EGRVRWQDTG SAQGFGEVWG EGIGKGLRFG  420
GRGRGDDGEA RDCQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	320	RKRKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	2e-81	NAC family protein