PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018239.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 377aa MW: 41756.9 Da PI: 6.4252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018239.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	203	248	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N +f Lr+++P+ +++Ka+ L Av YI++L PCP018239.1 203 NHVEAERQRREKLNCRFYALRSVVPNV-----SRMDKASLLSDAVVYINEL 248 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MDVDGGDVTD AEWFYFYTVS LTQSFTAGHG NSNILGRTFC SGGFVWLAGD HQLQFYECER 60 VKEARMHGIQ TLVCIATSCG VLELASLDVI KENWGLVQLS KSLFESDYTT TTTDKVSKQL 120 SSSLENHVPL LESGMFSGAD KNEWATQGGT KEAAPVNVGG SSSDSGPSDS VGNLTSKNTE 180 NIRLKKRGRS SNRETGRPES PINHVEAERQ RREKLNCRFY ALRSVVPNVS RMDKASLLSD 240 AVVYINELKA RVGQLESKIQ AQLQKPGVDI GGQTSSIVDH HQTRPRLSSS YNNRAFGDME 300 MDVKIVGSEA MLRVQCPDCD YPNARLMNAL KDLELQVYHA SISSVKELML QDVVVRVPHG 360 FTSEEAMRTA ILNRWYN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MDVDGGDVTD AEWFYFYTVS LTQSFTAGHG NSNILGRTFC SGGFVWLAGD HQLQFYECER  60
VKEARMHGIQ TLVCIATSCG VLELASLDVI KENWGLVQLS KSLFESDYTT TTTDKVSKQL  120
SSSLENHVPL LESGMFSGAD KNEWATQGGT KEAAPVNVGG SSSDSGPSDS VGNLTSKNTE  180
NIRLKKRGRS SNRETGRPES PINHVEAERQ RREKLNCRFY ALRSVVPNVS RMDKASLLSD  240
AVVYINELKA RVGQLESKIQ AQLQKPGVDI GGQTSSIVDH HQTRPRLSSS YNNRAFGDME  300
MDVKIVGSEA MLRVQCPDCD YPNARLMNAL KDLELQVYHA SISSVKELML QDVVVRVPHG  360
FTSEEAMRTA ILNRWYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	190	LKKRGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	9e-51	bHLH family protein