PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017419.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 307aa MW: 34370.6 Da PI: 6.8575

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017419.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	137	191	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++++eLAk+l+L rqV vWFqNrRa+ k PCP017419.1 137 RKKLRLSKEQSLLLEETFKEHNTLNPKQKQELAKQLNLRPRQVEVWFQNRRARTK 191 788899***********************************************98 PP
2	HD-ZIP_I/II	124.3	5.5e-40	137	226	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ lLEe+F+e+++L+p++K+ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+e+n+rL+kev+eLr +l PCP017419.1 137 RKKLRLSKEQSLLLEETFKEHNTLNPKQKQELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCEKLTEDNRRLHKEVQELR-AL 226 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MSENMKDMNG LGLGLGLSLS LGLKPNESEP CLQLNLMEKP SHPMQNHPHR TSWNESFQFP 60 DRNPDTRSFL IDVNEAPSMV DFEEENGVSS PNSTVSSLSG KRSDREPIVD ENEGERTSCS 120 HGGGSDDEDG NGGDMSRKKL RLSKEQSLLL EETFKEHNTL NPKQKQELAK QLNLRPRQVE 180 VWFQNRRART KLKQTEVDCE LLKRCCEKLT EDNRRLHKEV QELRALKLSP QFYMQMNPPT 240 TLTMCPSCER VAVSSSSSSA TAPASSPTLA NGPTCQNGPP NIQRPIPISP WAKLPIQHRT 300 LDASAPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	142	SRKKLRL
2	186	194	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-78	HD-ZIP family protein