PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017102.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 406aa    MW: 45058.5 Da    PI: 7.8642
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017102.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-175498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
      PCP017102.1 54 REKWTEEEHQKFLEALKLYGRG-WRQIEEYVG-TKTAVQIRSHAQKF 98
                     789*******************.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MAVEDQIEAT GSNASVAVGN CSSNGDAQSN AEICSFGSDH APKVRKPYTI TKQREKWTEE  60
EHQKFLEALK LYGRGWRQIE EYVGTKTAVQ IRSHAQKFFS KLSKESCGPS EGTIRLIEIP  120
PPRPKRRPVH PYPRKSVDYL NGSPESITDL HPRLHVPLTC TLRAYAPFGK ESDYVVSNSS  180
ADEVKGSSPL VQLEKFPSVN YRSGSKHTVS TEEDAGNIRA SVSIKLFGRT VLVPDSEKQP  240
PPGAEDSKML TSKVEEDKCE RENDKLVQLS RSDQLDTSLT LGGIVGNVVS SACGATTEWE  300
HQKHSPNPEA PLPWWCMYHG FMDPHVRSCN QNSAKITGRS FHSAVESLGE RRIEAVDSLL  360
EETCSVPCSS RKGFAAYKRC LADVNKNSSA IVYEDMRDRR RARVCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.19e-46MYB_related family protein