PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017004.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 1164aa MW: 130041 Da PI: 6.9918

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.1	5.8e-22	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l PCP017004.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSMQPPA-QELVAKDLHDSAWTFRHIYRGQPKRHLLTTGWSIFVSTKRLFAGDSVLFI--RDEKSQL 221 99***************************9445444.38**********************************************..4567778 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PCP017004.1 222 LLGIRRA 228 9999997 PP
2	Auxin_resp	124.5	7.2e-41	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW++S+Wr+L+ PCP017004.1 253 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKGSQWRNLQ 335 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1164 aa Download sequence
MKVPTNGFLA NSGEAGEQKR INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK 60 ETDFIPNYPN LPSKLICMLH NVTLHADTET DEVYAQMTLQ PVNKYEKEAL LASNMGLKQS 120 RQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPSLDFSM QPPAQELVAK DLHDSAWTFR 180 HIYRGQPKRH LLTTGWSIFV STKRLFAGDS VLFIRDEKSQ LLLGIRRANR QQPAISSSVI 240 SSDSMHIGIL AAAAHAAANN SPFTIFYNPR ASPSEFVVPL AKYNKAMYTQ VSLGMRFRMM 300 FETEESGVRR YMGTITGISD LDPVRWKGSQ WRNLQVGWDE STAGERPSRV SIWEIEPVVT 360 PFYICPPPFF RPKFPKQPGM QDDESDIENA FKRAMPWLGD EFGMKNSPSS VFPGLSLVQW 420 MNMQQNNQFS ASQSGFFPSM VPPTSLQNNL GADDSSKLLN FQAPVLSATG LQSNKPAPQN 480 QASQMQQPNV TWAQQQQPQQ LMHNPMSQQQ QSNPQQQQLH QLLNSSANQH QQNHPQQQLQ 540 QLLQMPTNQQ LQNYSHQQQQ REPQQQQDPQ NLLQHQQLHQ QQPQRQQHQQ QQLSQPNPVN 600 NGSVAPNQVL GQNLQQPVMF SQHQQQQLLT GNTQSQQAVH SSSKNSFQVP TGQQNSQLQQ 660 QQLEPQPGLL QRQQQVAQLQ PSPQQFLQQN MSQKVQQQPQ VQQSSQQGIS EQQLQLQLLQ 720 KFHQQQQPQL LSPSSSLLQP QLLQQQLAHQ QNQQLQQLPM TQHHQQQLSG NSFSTDRLLN 780 NFAAPLVMQS HHMPSIQPQN QHKPLTAIRS HSGLTEGDGP SCSTSPSTNN CQMSPSKYLN 840 RNQQGTAMLL GDSVAEPAHN LVQELQGKSD IRIKNELPSS KGPDQIKYKG TITDQLEASS 900 SGTSYCLDAS TIHQNYALPT FCLDGDVQSN PRSSLPFSAN IDGLAPDTLL SRGYDSQKDL 960 QNLLSNYGGT PRDIEIELPT AAISSQSFGA PNLPFKTGCS SDIPITDTGV LGNGLWANQA 1020 QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI EGQLEDPHRT DWKLVYVDHE 1080 NDILLVGDDP WEEFVSCVQS IKILSSVEVR QMSLDGDLGN IPVPNQASSG TDSGNAWRPQ 1140 YDDNSAASFN RSAGAHKSLT LYSD

Sequence ? help Back to Top

Protein Sequence Length: 1164 aa Download sequence

MKVPTNGFLA NSGEAGEQKR INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK  60
ETDFIPNYPN LPSKLICMLH NVTLHADTET DEVYAQMTLQ PVNKYEKEAL LASNMGLKQS  120
RQPAEFFCKT LTASDTSTHG GFSVPRRAAE KIFPSLDFSM QPPAQELVAK DLHDSAWTFR  180
HIYRGQPKRH LLTTGWSIFV STKRLFAGDS VLFIRDEKSQ LLLGIRRANR QQPAISSSVI  240
SSDSMHIGIL AAAAHAAANN SPFTIFYNPR ASPSEFVVPL AKYNKAMYTQ VSLGMRFRMM  300
FETEESGVRR YMGTITGISD LDPVRWKGSQ WRNLQVGWDE STAGERPSRV SIWEIEPVVT  360
PFYICPPPFF RPKFPKQPGM QDDESDIENA FKRAMPWLGD EFGMKNSPSS VFPGLSLVQW  420
MNMQQNNQFS ASQSGFFPSM VPPTSLQNNL GADDSSKLLN FQAPVLSATG LQSNKPAPQN  480
QASQMQQPNV TWAQQQQPQQ LMHNPMSQQQ QSNPQQQQLH QLLNSSANQH QQNHPQQQLQ  540
QLLQMPTNQQ LQNYSHQQQQ REPQQQQDPQ NLLQHQQLHQ QQPQRQQHQQ QQLSQPNPVN  600
NGSVAPNQVL GQNLQQPVMF SQHQQQQLLT GNTQSQQAVH SSSKNSFQVP TGQQNSQLQQ  660
QQLEPQPGLL QRQQQVAQLQ PSPQQFLQQN MSQKVQQQPQ VQQSSQQGIS EQQLQLQLLQ  720
KFHQQQQPQL LSPSSSLLQP QLLQQQLAHQ QNQQLQQLPM TQHHQQQLSG NSFSTDRLLN  780
NFAAPLVMQS HHMPSIQPQN QHKPLTAIRS HSGLTEGDGP SCSTSPSTNN CQMSPSKYLN  840
RNQQGTAMLL GDSVAEPAHN LVQELQGKSD IRIKNELPSS KGPDQIKYKG TITDQLEASS  900
SGTSYCLDAS TIHQNYALPT FCLDGDVQSN PRSSLPFSAN IDGLAPDTLL SRGYDSQKDL  960
QNLLSNYGGT PRDIEIELPT AAISSQSFGA PNLPFKTGCS SDIPITDTGV LGNGLWANQA  1020
QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI EGQLEDPHRT DWKLVYVDHE  1080
NDILLVGDDP WEEFVSCVQS IKILSSVEVR QMSLDGDLGN IPVPNQASSG TDSGNAWRPQ  1140
YDDNSAASFN RSAGAHKSLT LYSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein