PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016441.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 1373aa MW: 154907 Da PI: 6.2831

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016441.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	240.1	9.6e-74	265	574	2	320
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 + Ll++Ae v +++e+a++lL r + as + +p+qR+++yf+eAL++r+ + +++++yk + s+ s s++l++ + ++ P++ + +++a PCP016441.1 265 AHNLLAAAEKVGYQQFERANRLLLRCEFAASFKVNPVQRVVFYFAEALRERIEKeTGNSMYKGNEISSYSL-GLSTNLTFI-ACHQDIPFHPVLQFAA 360 699*************************************************77888888777777763.244444443.466778****** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 q Ile v+ e++vH iD++i G+QW L++ La+R+e p l iT+vg + k+++eetg+rLa++A++l+vpf+f++++++++ed++ + ++ PCP016441.1 361 IQVILENVALERKVHLIDLEIRSGVQWTGLMEVLAEREECPIeLLTITAVGV---TGKQKIEETGRRLASVAKALNVPFQFKAVIVTDMEDVKNQLFD 455 **********************************7665499***...68************************************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 v+ +E+++V l l +l ++ +le+ +++++++lsP v+vv e ea+hns+sF++rf++al yysa+fd+lea + +++e r+ +Er l++ PCP016441.1 456 VEDDEVVVVYAPLILRTLILRPSCLEN----LMRVIRNLSPCVMVVNEVEANHNSPSFVNRFIDALFYYSAFFDCLEACM-KHEESRVLMERL-LHEG 547 ***************99999999....*******************************************96.555677777776. PP GRAS 294 ivnvvacegaerrerhetlekWrerle 320 i+n+va+eg+er+ r+ ++e Wr+ + PCP016441.1 548 IRNIVAAEGSERVTRNVKMEVWRAFFA 574 *********************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1373 aa Download sequence
MANAFFSFTP FDFGVVGGGG GLTRQLEDYE KEDQEVVVFK GKPEHLFGME ELRLGEMEEF 60 SHLSKDQPQS KTSYSMLDNF SFDTVCSEHD LQRSNNMSEK ELDHVSKDHD HRHYQQQNQR 120 CQQQSKSNYS DLDNFNFDSA FHSTQPIQDM ANQLTYSQIG GSDIAETNKQ MPHQSSLAVL 180 ELLNNYGSAF KKLKRDRFCN SCNEAGASSY SIQQKLSTEE IMRVAGARYV QFSNQGYDDF 240 FMPLHPFGYA LSGLSEEETK DVELAHNLLA AAEKVGYQQF ERANRLLLRC EFAASFKVNP 300 VQRVVFYFAE ALRERIEKET GNSMYKGNEI SSYSLGLSTN LTFIACHQDI PFHPVLQFAA 360 IQVILENVAL ERKVHLIDLE IRSGVQWTGL MEVLAEREEC PIELLTITAV GVTGKQKIEE 420 TGRRLASVAK ALNVPFQFKA VIVTDMEDVK NQLFDVEDDE VVVVYAPLIL RTLILRPSCL 480 ENLMRVIRNL SPCVMVVNEV EANHNSPSFV NRFIDALFYY SAFFDCLEAC MKHEESRVLM 540 ERLLHEGIRN IVAAEGSERV TRNVKMEVWR AFFASLLCDI YGQKFHVEGP SDGVGSLEQK 600 MHQLKLQIQA ERVISVKEKV EKNREKVEGY VSKIISETAR ANLNALSSER NRSFKLFSSR 660 IEQPLCRISG FVRGCGEKDW IENQEVLFSS STKLPLADKI PPYTTWIFLD RNQRMAEDQS 720 VVGRRRIYYD EDGSEALVYS GTDDEAEEPE EVKHEFSAGE DRILLMAFQE HGLGEEVVEL 780 VKEFIGVPIS DILARYNTIK ERNPEKCEHE GCISLDKSLN AALDSFDNLF CRRCLVFDCR 840 LHGCSQPLIY PSEKSHWSGH DENREPCSDQ CYLRLSIVTS ERESAPGSSI NAERPSSHGG 900 TGLLHNERSI PGEAVPATSE AIHSSHILKM HNENIGKRKV VKHTDKVAND LTIVPDAFQG 960 SSKKQKRLDA LDLVTATSEP IPVQVHISRD EPRDVTEVPE LRQTSKSTCE QVEGIYSNSE 1020 WKPVEKDLYM KGLQIFGRNS CLIARNLLSG LRTCMEVSSY MHNSGASMPN RSVVGPSSFM 1080 EDNVKSDMDQ TEQEMSSKPR LLRRRGKARR LKYSWKSAGH PTMWKRIADG KNDSRKLYTP 1140 CGCQSMCGKE CPSVRRAAKI GSGDVTVQRV NVEVGSAHAL LLAVNVTQMS VVIVGCGDGS 1200 LGEPPRQGDS QCGNMRLLLR QQQRILLGKS DVAGWGAFLK NPVNKNDYLG EYTGEIISHQ 1260 EADKRGKIYD RAIALLWHDT CLLQYVLDAY RKGDKLKFAN HSSNPNCHAK VMLVAGDHRV 1320 GIFAKEHIDA GEELFYDYCY LSEAAPVWAQ KPEGSKRDDS SASRGRAKKH QPL

Sequence ? help Back to Top

Protein Sequence Length: 1373 aa Download sequence

MANAFFSFTP FDFGVVGGGG GLTRQLEDYE KEDQEVVVFK GKPEHLFGME ELRLGEMEEF  60
SHLSKDQPQS KTSYSMLDNF SFDTVCSEHD LQRSNNMSEK ELDHVSKDHD HRHYQQQNQR  120
CQQQSKSNYS DLDNFNFDSA FHSTQPIQDM ANQLTYSQIG GSDIAETNKQ MPHQSSLAVL  180
ELLNNYGSAF KKLKRDRFCN SCNEAGASSY SIQQKLSTEE IMRVAGARYV QFSNQGYDDF  240
FMPLHPFGYA LSGLSEEETK DVELAHNLLA AAEKVGYQQF ERANRLLLRC EFAASFKVNP  300
VQRVVFYFAE ALRERIEKET GNSMYKGNEI SSYSLGLSTN LTFIACHQDI PFHPVLQFAA  360
IQVILENVAL ERKVHLIDLE IRSGVQWTGL MEVLAEREEC PIELLTITAV GVTGKQKIEE  420
TGRRLASVAK ALNVPFQFKA VIVTDMEDVK NQLFDVEDDE VVVVYAPLIL RTLILRPSCL  480
ENLMRVIRNL SPCVMVVNEV EANHNSPSFV NRFIDALFYY SAFFDCLEAC MKHEESRVLM  540
ERLLHEGIRN IVAAEGSERV TRNVKMEVWR AFFASLLCDI YGQKFHVEGP SDGVGSLEQK  600
MHQLKLQIQA ERVISVKEKV EKNREKVEGY VSKIISETAR ANLNALSSER NRSFKLFSSR  660
IEQPLCRISG FVRGCGEKDW IENQEVLFSS STKLPLADKI PPYTTWIFLD RNQRMAEDQS  720
VVGRRRIYYD EDGSEALVYS GTDDEAEEPE EVKHEFSAGE DRILLMAFQE HGLGEEVVEL  780
VKEFIGVPIS DILARYNTIK ERNPEKCEHE GCISLDKSLN AALDSFDNLF CRRCLVFDCR  840
LHGCSQPLIY PSEKSHWSGH DENREPCSDQ CYLRLSIVTS ERESAPGSSI NAERPSSHGG  900
TGLLHNERSI PGEAVPATSE AIHSSHILKM HNENIGKRKV VKHTDKVAND LTIVPDAFQG  960
SSKKQKRLDA LDLVTATSEP IPVQVHISRD EPRDVTEVPE LRQTSKSTCE QVEGIYSNSE  1020
WKPVEKDLYM KGLQIFGRNS CLIARNLLSG LRTCMEVSSY MHNSGASMPN RSVVGPSSFM  1080
EDNVKSDMDQ TEQEMSSKPR LLRRRGKARR LKYSWKSAGH PTMWKRIADG KNDSRKLYTP  1140
CGCQSMCGKE CPSVRRAAKI GSGDVTVQRV NVEVGSAHAL LLAVNVTQMS VVIVGCGDGS  1200
LGEPPRQGDS QCGNMRLLLR QQQRILLGKS DVAGWGAFLK NPVNKNDYLG EYTGEIISHQ  1260
EADKRGKIYD RAIALLWHDT CLLQYVLDAY RKGDKLKFAN HSSNPNCHAK VMLVAGDHRV  1320
GIFAKEHIDA GEELFYDYCY LSEAAPVWAQ KPEGSKRDDS SASRGRAKKH QPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-42	GRAS family protein