PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016376.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 34055.9 Da PI: 7.2344

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016376.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.8e-19	142	196	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++ +++ ++++eLA+kl+L rqV vWFqNrRa+ k PCP016376.1 142 RKKLRLTKEQSSTLEDNFREHTTLNPKQKQELARKLNLRPRQVEVWFQNRRARTK 196 78889************************************************98 PP
2	HD-ZIP_I/II	120.3	1e-38	142	230	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+++LE++F+e+++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++lkeen+rL+ke +eL+ + PCP016376.1 142 RKKLRLTKEQSSTLEDNFREHTTLNPKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEADFELLKQCCETLKEENRRLHKELQELK-S 230 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGFDHEACNT GLGLSLGCQA NPDHHTNLRA FDLDHQKKKK IQLKYDHLFP ALTLGPSSGD 60 SKIEAAESDD HLHQVVHVQA QEQVSSPCSG AVSSFSNSSS FKRDRDIGVE EIEGEEERVV 120 NITTSSRVSD ELYDQDHEGS PRKKLRLTKE QSSTLEDNFR EHTTLNPKQK QELARKLNLR 180 PRQVEVWFQN RRARTKLKQT EADFELLKQC CETLKEENRR LHKELQELKS MKQTATAAAP 240 FYMQFPTATL TMCPSCEKIC NGGDHRNHNH NNGSSTSPFL IGSNKTHLIF NPYSTHPSTA 300 C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	199	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-64	HD-ZIP family protein