PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016278.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 528aa    MW: 58244.3 Da    PI: 4.7786
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016278.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.57.4e-1121595282374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++Ll+cA+ ++++d+ +a + L rl+e +s +gdp++R+a+yf+eAL++r++     l +  + +++ ++  ++ + ++k++++++P+ kf+hltaN
  PCP016278.1 159 LKALLDCAR-LTESDTDRAVKSLIRLRESVSDHGDPTERVAFYFAEALHSRVSV----LQSEKNFTTAYDTPCEDFTLSYKALNDACPYSKFAHLTAN 251
                  689******.566799************************************98....44444555555555999*********************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p s+Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + + +++l+ + +
  PCP016278.1 252 QAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPvSIRISGIPAPSLGdsPAASLFATGNRLREFAKLLELNFEFEP-ILTPVNELDESCF 348
                  *************************************77777**********999889999***********************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  r++p+EalaVn++lql++llde+ +  +   + Lkl ksl+P++v++ e ea++n+ +F+ rf +al+yy+alf+sle ++ r+s er kvEr llgr
  PCP016278.1 349 RFEPDEALAVNFMLQLYNLLDEKPTAVH---SALKLAKSLNPQIVTLGEYEANLNRVEFASRFKNALKYYTALFESLEPNMTRDSPERLKVERLLLGR 443
                  ********************99999999...9****************************************************************** PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i  +v  e++  +rer e +e+W+  +e++GF+pv+ls++ ++qak ll +++ s  y+++e+   ++ l W++ pL++vS+Wr
  PCP016278.1 444 RIGGLVGPEQSGtKRERFEDKEQWKYLMESSGFEPVALSHYSVSQAKILLWNYNySSLYSLKESPPGFLsLSWSEVPLFTVSSWR 528
                  *******9998779****************************************9999****99877777**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MPGGSDAGGE PGFPFPNLDH HAAGFRFSDL GGGGAAEFDS DEWMDSIIGG GDSTDSSNLP  60
YACDTWQGNN ADFGLYGADP FQPHCPSRLS NTCSPPSDLN RVVFSETQNQ LPTWTPPPPQ  120
QLHQVSIKES KSADHPSLKN DAVGVSLGSP EIESAPPLLK ALLDCARLTE SDTDRAVKSL  180
IRLRESVSDH GDPTERVAFY FAEALHSRVS VLQSEKNFTT AYDTPCEDFT LSYKALNDAC  240
PYSKFAHLTA NQAILEATER ATKIHIVDFG IVQGVQWAAL LQALATRSTG KPVSIRISGI  300
PAPSLGDSPA ASLFATGNRL REFAKLLELN FEFEPILTPV NELDESCFRF EPDEALAVNF  360
MLQLYNLLDE KPTAVHSALK LAKSLNPQIV TLGEYEANLN RVEFASRFKN ALKYYTALFE  420
SLEPNMTRDS PERLKVERLL LGRRIGGLVG PEQSGTKRER FEDKEQWKYL MESSGFEPVA  480
LSHYSVSQAK ILLWNYNYSS LYSLKESPPG FLSLSWSEVP LFTVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein