PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016175.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 561aa MW: 63902 Da PI: 6.1145

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016175.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.7	5.6e-27	372	455	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++ev aLi +r ++e+++ + +k++ Weevs+ m++ g+++s+ +Ck+kwen+nk+++k+k+++kkr + +s+tc+yf+ql PCP016175.1 372 RWPQSEVEALILVRGSVESKFVELGSKGHVWEEVSALMASMGYQKSARRCKQKWENINKYFRKTKHTAKKR-PLQSKTCSYFNQL 455 8*******************************************************************8.9*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MQSNFGAAEI GNQHFMDSNS SVLPVFNPQK QNQDFLHQQF HQQQPQPFHH LSQLAHPIPI 60 THDLFQRQNQ LQFQALLQQQ QQAQQEEGRL PWQPSPPSFK LGLSESSGPH NLGFKNWKTQ 120 EYYGIRRESM CWKPLDAVVA DTTNKRQRQE EGESCRDLEG KHRLYGELEA IYSLAKMGEA 180 NQNQTGSGSA LTGENCSKNV EFPVVFVDPN GLNAAPADNV RVDNVSEASI GEELSVGKIQ 240 KRKRKRKMKE QLSSMTRFFE NLVKQVVDHQ ENLHKKYLEV IEKMGKERRE REEAWRYQAE 300 ENHKRETMAK LHEQALASSR EALIVSYIEE ITGQRINLPP RQTPLLLQPD NVSEPQTAEE 360 LTPSQAVRTN SRWPQSEVEA LILVRGSVES KFVELGSKGH VWEEVSALMA SMGYQKSARR 420 CKQKWENINK YFRKTKHTAK KRPLQSKTCS YFNQLGQLYS KTPTTVPSSS SSVSMDVSIQ 480 RQGYSELLEA FVAGRETEVT HNLSNGNFEV SEMGFSRLDF NGISNGKVEN VQGDRGQEKE 540 NDEDGENMDE GEDSDGDDSD E

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MQSNFGAAEI GNQHFMDSNS SVLPVFNPQK QNQDFLHQQF HQQQPQPFHH LSQLAHPIPI  60
THDLFQRQNQ LQFQALLQQQ QQAQQEEGRL PWQPSPPSFK LGLSESSGPH NLGFKNWKTQ  120
EYYGIRRESM CWKPLDAVVA DTTNKRQRQE EGESCRDLEG KHRLYGELEA IYSLAKMGEA  180
NQNQTGSGSA LTGENCSKNV EFPVVFVDPN GLNAAPADNV RVDNVSEASI GEELSVGKIQ  240
KRKRKRKMKE QLSSMTRFFE NLVKQVVDHQ ENLHKKYLEV IEKMGKERRE REEAWRYQAE  300
ENHKRETMAK LHEQALASSR EALIVSYIEE ITGQRINLPP RQTPLLLQPD NVSEPQTAEE  360
LTPSQAVRTN SRWPQSEVEA LILVRGSVES KFVELGSKGH VWEEVSALMA SMGYQKSARR  420
CKQKWENINK YFRKTKHTAK KRPLQSKTCS YFNQLGQLYS KTPTTVPSSS SSVSMDVSIQ  480
RQGYSELLEA FVAGRETEVT HNLSNGNFEV SEMGFSRLDF NGISNGKVEN VQGDRGQEKE  540
NDEDGENMDE GEDSDGDDSD E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	247	KRKRKRK
2	241	248	KRKRKRKM
3	242	247	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-40	Trihelix family protein