PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015844.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 488aa MW: 53035.4 Da PI: 5.6444

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015844.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.7e-19	171	218	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+WvAeIr + kr +lg++ tae+Aa+a++aa+++l+g PCP015844.1 171 KYRGVRLRS-SGKWVAEIRQkW------KRLWLGTYPTAEMAARAYDAAALSLKG 218 8***999.7*****88......**********************998 PP
2	AP2	54.8	2.3e-17	356	403	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r + +g+WvA+I+ rk+f+lg++ tae+Aa+a++aa+++l+g PCP015844.1 356 KYRGIRLRC-SGKWVAQICQK-----RKTFWLGTYPTAEMAARAYDAAALSLKG 403 8***887.8**9994.....6**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MITATAESTR RATASLNFPE LAKSLPKPES VSPLSIPAAA AKAAAEAEAA SGKIRLYGKQ 60 RLKKAEPMSK AQESTITCAS TDCDVEKLVS TAADPLEGSG CTYWKCLAFF GCLLEAIFGE 120 DECFCRMLCA DEGTCLAGQE PNNVEEQRNK KKRQTNSTLT SDDHSDSNHQ KYRGVRLRSS 180 GKWVAEIRQK WKRLWLGTYP TAEMAARAYD AAALSLKGAS AILNFPELAQ ALPLSDSLSP 240 MDIQVAALAS EEKQIIGEAV TKEAEPSSKA QESTSICASI DCDVDKLVST AADNCTSEKG 300 QEPNNVEEQN NKKKRQRTLN CTSKKGQQPN NVEEQNNKKR QRTSTSDDHS GSNHQKYRGI 360 RLRCSGKWVA QICQKRKTFW LGTYPTAEMA ARAYDAAALS LKGASADLNF PELSQAFPQS 420 DSLSPMDIQV AALASEEKHI VGEAVTEEAE PSSKAQESTS ICASTDCDAE KLVSIIEVSI 480 ESENFAFR

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MITATAESTR RATASLNFPE LAKSLPKPES VSPLSIPAAA AKAAAEAEAA SGKIRLYGKQ  60
RLKKAEPMSK AQESTITCAS TDCDVEKLVS TAADPLEGSG CTYWKCLAFF GCLLEAIFGE  120
DECFCRMLCA DEGTCLAGQE PNNVEEQRNK KKRQTNSTLT SDDHSDSNHQ KYRGVRLRSS  180
GKWVAEIRQK WKRLWLGTYP TAEMAARAYD AAALSLKGAS AILNFPELAQ ALPLSDSLSP  240
MDIQVAALAS EEKQIIGEAV TKEAEPSSKA QESTSICASI DCDVDKLVST AADNCTSEKG  300
QEPNNVEEQN NKKKRQRTLN CTSKKGQQPN NVEEQNNKKR QRTSTSDDHS GSNHQKYRGI  360
RLRCSGKWVA QICQKRKTFW LGTYPTAEMA ARAYDAAALS LKGASADLNF PELSQAFPQS  420
DSLSPMDIQV AALASEEKHI VGEAVTEEAE PSSKAQESTS ICASTDCDAE KLVSIIEVSI  480
ESENFAFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	317	KKKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	5e-23	ERF family protein