PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015750.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 387aa MW: 43277 Da PI: 7.498

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015750.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.9	3e-12	181	206	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ PCP015750.1 181 YQPDICKDYKETGYCGYGDSCKFMHD 206 66789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MADSGGNPEP GKVCNFIPKS SMKQNIRRQR PHEDEEEDNS TYGGTSFPSQ RKAAKPDGKL 60 YFSSGPAKSS TSDGSAIFEF KSSKEIQVEN DSRATATLET ETEFSRDARA VRERVLKQAE 120 EALQGKSKET GNEKLYKGIH GYTDYKAGFR RELTVASEKA GGSHGPLRAS AHIRATTRFD 180 YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW EEAEKTRKRN LALGQDDVDQ 240 SEDDDDDDED GSLPFACFIC RKPFVDPVVT KCNHYFCEHC TLKHHSKNKK CFVCDKPTLG 300 IFNTAHETPK HTGNPHSLAF LNCKSSFLGL RRESTTALYA SIQNAAVILT HGENPSFPGF 360 VFIRSTRVSA AGGRQSPMSS MFARNDR

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MADSGGNPEP GKVCNFIPKS SMKQNIRRQR PHEDEEEDNS TYGGTSFPSQ RKAAKPDGKL  60
YFSSGPAKSS TSDGSAIFEF KSSKEIQVEN DSRATATLET ETEFSRDARA VRERVLKQAE  120
EALQGKSKET GNEKLYKGIH GYTDYKAGFR RELTVASEKA GGSHGPLRAS AHIRATTRFD  180
YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW EEAEKTRKRN LALGQDDVDQ  240
SEDDDDDDED GSLPFACFIC RKPFVDPVVT KCNHYFCEHC TLKHHSKNKK CFVCDKPTLG  300
IFNTAHETPK HTGNPHSLAF LNCKSSFLGL RRESTTALYA SIQNAAVILT HGENPSFPGF  360
VFIRSTRVSA AGGRQSPMSS MFARNDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-152	C3H family protein