PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP015443.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 291aa    MW: 33411 Da    PI: 9.5186
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP015443.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.97.4e-2033120286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +Li+a++e++ +lrrg+lk  +Weev+  +      + +  ++s++qC++k+e+l++r++++k++ ++rt   +s +p+f+ +e
  PCP015443.1  33 WTQEETVQLIRAYQEKWYALRRGQLKSSQWEEVAVTVaarcgyEYGEPSKSATQCRHKMEKLRQRHRAVKKRLGQRT---KSGWPFFELME 120
                  ***********************************998777766666689************************984...457*****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MSTPLPPSPT ASPMASVSAS PTATAKKSQP LPWTQEETVQ LIRAYQEKWY ALRRGQLKSS  60
QWEEVAVTVA ARCGYEYGEP SKSATQCRHK MEKLRQRHRA VKKRLGQRTK SGWPFFELME  120
QMERGPMPIS VMPMAEMPHQ QEEEERDYHD RNYHGGNEDD DEENSNKVRS IDFILRRPTF  180
VNRFSGKASF LQGPAAAAEL KRGREAVGEC DVAEPPQHRG REMVVELADE MRAFAQQLIG  240
VENMRMKMMK ETERYRVEME KRRMSMILQS QQKIVHSINT AFGSSNKLST S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.16e-49Trihelix family protein