PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013959.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 291aa    MW: 33297.5 Da    PI: 8.8318
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013959.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.5e-2441123186
     trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W  +e+++Li++r e+e r +  +k+ kp+We+vs+km ergf+r+p+qCk+kw+nl  ryk  ++++ +    s ++cp+f++l+
  PCP013959.1  41 QWAPDETRELIAIRGELEIRDSVvSKRSKPQWEAVSSKMTERGFNRTPEQCKCKWKNLLIRYKGKETSDPE----SGRECPFFEELH 123
                  7*****************9988648899************************************9999997....4667******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MYGGGGDEEA SVGLRGGGGG GGGGGGGMMK MMISSPTGAG QWAPDETREL IAIRGELEIR  60
DSVVSKRSKP QWEAVSSKMT ERGFNRTPEQ CKCKWKNLLI RYKGKETSDP ESGRECPFFE  120
ELHAVFTERA KNMQRLLLES EAGSARPKKL VKRKSRSGQW SDELSEDAEE EDSNGKGKKR  180
KGEGVVLARA INAASGSSTS SVQELLKEFF QHQQRMEMEW RQMMETRALE RRLFEEEWRQ  240
KMEKTERERL MVEQAWRERE EERRIREESR AERRDALLTT LLNRLINQNN F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-32Trihelix family protein