PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013453.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 603aa MW: 68757.1 Da PI: 9.3385

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013453.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173	8.7e-54	8	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhPtdeel+ +yL kkv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ + PCP013453.1 8 LPPGFRFHPTDEELILHYLIKKVASSPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPsgG 104 79**************************.89***********988899***********************************99888 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kk Lvfykgr pkg kt+W+mheyrl PCP013453.1 105 RQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136 889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MKNPESRLPP GFRFHPTDEE LILHYLIKKV ASSPLPVSII AEVDIYKFDP WELPAKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGRQNVGV KKALVFYKGR 120 PPKGIKTNWI MHEYRLPESP NNYTTTTNHH RAMKLNDLSM RLDDWVLCRI YKKSNVVTSA 180 AALPNDQDQD VQGEEDFLHD ILLPSLKSPF PILDHNMMST STTSSLKPQK SCSFSNLLDA 240 MDYSLLTSIL ADGQYYIPTG TGLQSTTPNK FSYSCTGSTS TGLDPQPLFN TNISSNRSHL 300 FQTLPQYNGL NLPSSAPSTE NRLKRQHSIT DDRGMLLYPS KKDVNSNCSF TNTANSFLNQ 360 QLLLKKKMTN LAKLDFVALD ITGKNYLTWV MDTKIHLEAG NFGETIKEEN NAFSQDRANA 420 MIFICCHLDE GLKSKYLTVE DLLALWKTLR NRYNYQKTMI LLKARYEWTH LRIQDFKSIA 480 EYNSAMFKIS SQMKLCGETI IEEDMLEKFF STFHASNVLL QQQYRERGFI EYNHLISVFF 540 VAEQNNELLM KNHQSRPTGL KSFPEVNADS LEVNTTSSRG NNYKRGRGHM QGRWNEKGKN 600 HGV

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MKNPESRLPP GFRFHPTDEE LILHYLIKKV ASSPLPVSII AEVDIYKFDP WELPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGRQNVGV KKALVFYKGR  120
PPKGIKTNWI MHEYRLPESP NNYTTTTNHH RAMKLNDLSM RLDDWVLCRI YKKSNVVTSA  180
AALPNDQDQD VQGEEDFLHD ILLPSLKSPF PILDHNMMST STTSSLKPQK SCSFSNLLDA  240
MDYSLLTSIL ADGQYYIPTG TGLQSTTPNK FSYSCTGSTS TGLDPQPLFN TNISSNRSHL  300
FQTLPQYNGL NLPSSAPSTE NRLKRQHSIT DDRGMLLYPS KKDVNSNCSF TNTANSFLNQ  360
QLLLKKKMTN LAKLDFVALD ITGKNYLTWV MDTKIHLEAG NFGETIKEEN NAFSQDRANA  420
MIFICCHLDE GLKSKYLTVE DLLALWKTLR NRYNYQKTMI LLKARYEWTH LRIQDFKSIA  480
EYNSAMFKIS SQMKLCGETI IEEDMLEKFF STFHASNVLL QQQYRERGFI EYNHLISVFF  540
VAEQNNELLM KNHQSRPTGL KSFPEVNADS LEVNTTSSRG NNYKRGRGHM QGRWNEKGKN  600
HGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-98	NAC family protein