PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013436.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 704aa MW: 78609 Da PI: 5.6577

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013436.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.2	3.9e-24	22	152	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 + +rFhPt++e v ++L kk+++++ ++ +++ +d+ k+ePw+Lp+ ++ k wy Fs+ d k+ +++r nr tk+g Wk k+++v + PCP013436.1 22 VAIRFHPTEDEKV-NFLSKKIKSHNSQACLFLPVIDVRKFEPWELPEhmfpDSPHHAKAWYSFSPCDYKSINSRRFNRETKKGSWKMNSKQRDVGT-- 116 678********.9******999888***********535553344778********************************98.. PP NAM 97 gelvglkktLvfy.....kgrapkgektdWvmheyr 127 + + k+tL+f +g+++k+ t W mhey PCP013436.1 117 KYFTCKKRTLTFQiktfqEGSKSKSIPTGWKMHEYI 152 55677788999988777789999999*******5 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MRNISSSSST TTTAQSVPDM VVAIRFHPTE DEKVNFLSKK IKSHNSQACL FLPVIDVRKF 60 EPWELPEHMF PDSPHHAKAW YSFSPCDYKS INSRRFNRET KKGSWKMNSK QRDVGTKYFT 120 CKKRTLTFQI KTFQEGSKSK SIPTGWKMHE YICIKPKRGS SPHQERDQRR DFVLCVLKYK 180 PVDSKSNTGT SIRGDFADST GNRGYIASSS GDDESAVAAA LNQDDGEPGG GSSSSDFINK 240 SLCDMIQEWQ SYAPAGECLN SLLPLPEQPQ LRHSLDIYSH EVVDPGTGGC ITYNSDNQAA 300 ATNHIIPNTE EILACKQREG SAVLGSGNHD DGEPGSGISS DFNDHAVDDM QEFNQLDKLL 360 DLPLSPPELS QPHQLENVPG VHSGKFSNWP SPIGVNTSYV TNKNNIATNY EKEPVINSAF 420 NSYNRATDER ISEVYSQAEE NLGLPFQPFD QLQNYAWQSP MLFSEVGELL LANNYIGCNE 480 SQFLDMELWQ LENHLRELSG KLIIAQIELK QQLEMVNLVR NSSTEPVGVD VQQCEISHHI 540 SSGVSHSIML EQESGLELNH RANHVVGLNG SNGCCVQSIR ETFQLLMNTL LAIFASKCLS 600 AYQSDRLEQA KGTWIILCEV LRLQCIMDVS ANEDHSSSFL SFIDVFIVDW FLDSSSKTLC 660 SKIKLQILNP LQTRAQHGSW PRDMHAEPSK AGFSFWAVGI SLAV

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MRNISSSSST TTTAQSVPDM VVAIRFHPTE DEKVNFLSKK IKSHNSQACL FLPVIDVRKF  60
EPWELPEHMF PDSPHHAKAW YSFSPCDYKS INSRRFNRET KKGSWKMNSK QRDVGTKYFT  120
CKKRTLTFQI KTFQEGSKSK SIPTGWKMHE YICIKPKRGS SPHQERDQRR DFVLCVLKYK  180
PVDSKSNTGT SIRGDFADST GNRGYIASSS GDDESAVAAA LNQDDGEPGG GSSSSDFINK  240
SLCDMIQEWQ SYAPAGECLN SLLPLPEQPQ LRHSLDIYSH EVVDPGTGGC ITYNSDNQAA  300
ATNHIIPNTE EILACKQREG SAVLGSGNHD DGEPGSGISS DFNDHAVDDM QEFNQLDKLL  360
DLPLSPPELS QPHQLENVPG VHSGKFSNWP SPIGVNTSYV TNKNNIATNY EKEPVINSAF  420
NSYNRATDER ISEVYSQAEE NLGLPFQPFD QLQNYAWQSP MLFSEVGELL LANNYIGCNE  480
SQFLDMELWQ LENHLRELSG KLIIAQIELK QQLEMVNLVR NSSTEPVGVD VQQCEISHHI  540
SSGVSHSIML EQESGLELNH RANHVVGLNG SNGCCVQSIR ETFQLLMNTL LAIFASKCLS  600
AYQSDRLEQA KGTWIILCEV LRLQCIMDVS ANEDHSSSFL SFIDVFIVDW FLDSSSKTLC  660
SKIKLQILNP LQTRAQHGSW PRDMHAEPSK AGFSFWAVGI SLAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	2e-21	NAC family protein