PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013225.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 270aa MW: 30439.2 Da PI: 9.6768

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013225.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2.1e-06	72	96	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lCr f+ G C+ G rC+FaHg PCP013225.1 72 YKTKLCRKFQM-GCCSSGQRCSFAHG 96 9********.***********9 PP
2	zf-CCCH	27.9	4.2e-09	132	155	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr f+r GtC+yGd+C+F H+ PCP013225.1 132 VRICRSFFRWGTCSYGDKCRFRHV 155 799******************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MSTPLPTQQF FARYLESVDN GRQRKHQIPT EKKEIKAQSD IKSQAFKKPR TSEAVSNSNA 60 ASGQNKMLPS YYKTKLCRKF QMGCCSSGQR CSFAHGTSDR RRTLRDAQGM ETEKGNLDRM 120 TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RDSSFISIST AGGSAQFDCK 180 KSLELRKLCG YTTPECGSVQ ANSLMTYTRG NNASNRRMGV ATAYKHGQST QCNLEWNELE 240 KLSRIYADWI EDMPLLNGSS SKVECYSSLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-11	C3H family protein