PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013113.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 396aa    MW: 43434.5 Da    PI: 7.2264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013113.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-08141161526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C++f++ G+Ck Gd C FaHg
  PCP013113.1 141 ACPDFRK-GHCKKGDACEFAHG 161
                  7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MMLGEPHRPN PTVHVPPWLL YDDSTAEMYS PFPLSGVSVS SDGNANGADF NSPYYLHEAL  60
TTFQRYLPSN ETDPDSDSDI SGRESDAPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKGDACEFAH GVFECWLHPA RYRTQPCKDG  180
TSCKRRVCFF AHTPEQLRVL PQQSPRGGGN SLNSAESYDG SPLRQAMEAA AASCVKTMPF  240
MSSPPEESPE VSPPVSPMSR SLGSGSINEM VASLRNLQLG KVKSFPSSRN VKMGGSSGFG  300
SPGSPGFGSP RGSILRPGFS SLPSTPTRVP PRSGISYLDF CEESCEEPAM ERVESGRGLR  360
AKMFEKLREE NSVGRVDPGP NCSGAPDVGW VSELVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-129C3H family protein