PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012960.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRF

Protein Properties

Length: 569aa MW: 61333.6 Da PI: 8.3151

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012960.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.5	5.5e-24	211	254	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e PCP012960.1 211 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHMNRGRHRSRKPVE 254 79***************************************998 PP
2	QLQ	63.3	6.5e-22	141	177	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll++i+k PCP012960.1 141 GPFTPSQWMELEHQALIYKYITANMPIPSNLLFPIKK 177 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MDFGVVGFDG LGGCFSDSGF PFAATSSAAD QEAEKHKWLY GSRSHRQGRS ADEGEDWRSS 60 KLAKTDDFSA SKATQQQHQQ QQLLSFSNSP NSESIMVEKN ATMPYFHQTL SAYNTSSAGQ 120 NTGSLSNGGA GMHWSLAGGR GPFTPSQWME LEHQALIYKY ITANMPIPSN LLFPIKKALD 180 SAGFSTFPNG LLRPNSLGWG SIHLGFSNNT DPEPGRCRRT DGKKWRCWRD AVPDQKYCER 240 HMNRGRHRSR KPVEGHTGHT GTTTTTTSKQ PLASSSSTSV VSVPGGGGGS SLAVANQQLK 300 SLQQPAASNS SAATTKTSRM FMNKEKAGER IQHTPGLSML SKENPFLTQK QQIGHEESPR 360 TEFGLVLSDS LLNPSQKASC PAETNSQHHS LRHFINDCPK TQSDCQPVSW PNQLDMQSDR 420 TQLSISIPIA SSTSNETLSP LHLPRELESP ASMGLGVGSG HALSEQNNIK QANWIPTAWE 480 TSVGGPLGEV LHNPNSSNSA AEYKNNSSVL NLMTGGSWDN NNNSPSPLGS SPTGVLQKMA 540 FGSLSNSSAG SSPRAENNNR SHEGFSLLQ

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MDFGVVGFDG LGGCFSDSGF PFAATSSAAD QEAEKHKWLY GSRSHRQGRS ADEGEDWRSS  60
KLAKTDDFSA SKATQQQHQQ QQLLSFSNSP NSESIMVEKN ATMPYFHQTL SAYNTSSAGQ  120
NTGSLSNGGA GMHWSLAGGR GPFTPSQWME LEHQALIYKY ITANMPIPSN LLFPIKKALD  180
SAGFSTFPNG LLRPNSLGWG SIHLGFSNNT DPEPGRCRRT DGKKWRCWRD AVPDQKYCER  240
HMNRGRHRSR KPVEGHTGHT GTTTTTTSKQ PLASSSSTSV VSVPGGGGGS SLAVANQQLK  300
SLQQPAASNS SAATTKTSRM FMNKEKAGER IQHTPGLSML SKENPFLTQK QQIGHEESPR  360
TEFGLVLSDS LLNPSQKASC PAETNSQHHS LRHFINDCPK TQSDCQPVSW PNQLDMQSDR  420
TQLSISIPIA SSTSNETLSP LHLPRELESP ASMGLGVGSG HALSEQNNIK QANWIPTAWE  480
TSVGGPLGEV LHNPNSSNSA AEYKNNSSVL NLMTGGSWDN NNNSPSPLGS SPTGVLQKMA  540
FGSLSNSSAG SSPRAENNNR SHEGFSLLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-66	GRF family protein