PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012943.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 372aa    MW: 40987.1 Da    PI: 8.1808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012943.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08137158426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++f++ G+C+ Gd+C FaHg
  PCP012943.1 137 AACPDFRK-GHCPKGDSCEFAHG 158
                  78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MMLGEPTRLH PTLHVPPWDS LDDHVIHTPT SPFSIPIHSG NSNGNASNGG DYSPLSPMFL  60
DSLAALHRYL PSNESDSLAE DPDMPMNPIS CDQFRMFEFK VRRCAHGRSH DWTDCPYAHP  120
GEKARRRDPR KYHYSGAACP DFRKGHCPKG DSCEFAHGVF ECWLHPARYR TQPCKDGLRC  180
NRRVCFFAHT PEQLRVLPGQ SPRTQGSGAL DSYPFGSSPT SILMSPPLSP PSESPPMSPN  240
SPQLGRNSVS KLVASMRNFK LAKMKMNSPP AWGTQMGSGF GSSPRGSAFR PGLCSLPSTP  300
TRTTGRVGPN PVDIWDQPCE EEPAMERVES GRDLRARMYA RLSKENSLGR VGRVDSGTSA  360
PDVGWISDLV SE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein