PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012920.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 557aa MW: 63806.9 Da PI: 5.5783

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012920.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.1	1e-27	369	452	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++ev aLi +r+++e+++ + +k++ Weevs+ m++ g+++s+ +Ck+kwen+nk+++k+k+++kkr + +s+tc+yf+ql PCP012920.1 369 RWPQNEVEALILVRSSVESKFAELGSKGHVWEEVSALMASMGYQKSARRCKQKWENINKYFRKTKDTAKKR-PLKSKTCSYFSQL 452 8*******************************************************************8.9********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MQSNFETAEI GNQQFMDSRS SVLPIFSPQK QNQNHFLQQF HQQQPFSHVS QIAQPIPITH 60 DLFQRQNHLQ FQALLQQQQQ EQQEESRLPW QPSPLSFKLG LSENSGPHNL GFKNWQTQEY 120 YGIIREPMCS WKPLDAIVPD TTNNRQRQEE GERCRDLEEK HRLYGELEAI YNLAKMGEGN 180 QNQTGSGSAL TGENCLKNVG FPVVFGDSNG LNVAPADTFR EDNRSEDSIG EEVLVRKIRK 240 RKRKMKEQLS SMTRFFENLV KQVVDHQENL HKKYLEVIEK MDKERREREE AWRYQAEENH 300 KREAMGKLHE QAIASSREAL IVSYIEKITG QRVNLPPREI PLLLQPDNSS EPETAEELTP 360 SKADNANSRW PQNEVEALIL VRSSVESKFA ELGSKGHVWE EVSALMASMG YQKSARRCKQ 420 KWENINKYFR KTKDTAKKRP LKSKTCSYFS QLGQLYSKTP TVPSLSSSVS MDVSIQRQGC 480 SELLEAFIAG RETGVTHNLP NGNFAISEKG SSRLDFNGIG DGKVEHVQGD SGKEKENDED 540 DENMDEREEI DGDDSDE

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MQSNFETAEI GNQQFMDSRS SVLPIFSPQK QNQNHFLQQF HQQQPFSHVS QIAQPIPITH  60
DLFQRQNHLQ FQALLQQQQQ EQQEESRLPW QPSPLSFKLG LSENSGPHNL GFKNWQTQEY  120
YGIIREPMCS WKPLDAIVPD TTNNRQRQEE GERCRDLEEK HRLYGELEAI YNLAKMGEGN  180
QNQTGSGSAL TGENCLKNVG FPVVFGDSNG LNVAPADTFR EDNRSEDSIG EEVLVRKIRK  240
RKRKMKEQLS SMTRFFENLV KQVVDHQENL HKKYLEVIEK MDKERREREE AWRYQAEENH  300
KREAMGKLHE QAIASSREAL IVSYIEKITG QRVNLPPREI PLLLQPDNSS EPETAEELTP  360
SKADNANSRW PQNEVEALIL VRSSVESKFA ELGSKGHVWE EVSALMASMG YQKSARRCKQ  420
KWENINKYFR KTKDTAKKRP LKSKTCSYFS QLGQLYSKTP TVPSLSSSVS MDVSIQRQGC  480
SELLEAFIAG RETGVTHNLP NGNFAISEKG SSRLDFNGIG DGKVEHVQGD SGKEKENDED  540
DENMDEREEI DGDDSDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	244	RKIRKRKRK
2	239	244	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-42	Trihelix family protein