PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012292.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 932aa MW: 103303 Da PI: 8.4803

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012292.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	90	149	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ PCP012292.1 90 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 149 7***************99************************************97 PP
2	Wus_type_Homeobox	115.5	2.6e-37	90	151	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq PCP012292.1 90 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 151 8***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence
MSSMKVHQFA RGLWEHEPSL TLGCTKRLRP LAPRLANTAA TSDTTTTLAP FDLKSFIRPE 60 SSPRKLGSSN QLQEKKDSPH PQVESHPGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ 120 ITAQLGKYGK IEGKNVFYWF QNHKARERQK QKRSSLGLSH SPRTPTSVIT TLGEVVVERE 180 EDNPYKRKGR SWEFDCLVEG DHSSSTSSVV CKLDNDDAIE GDEGDLGMQA VRSHRCKQPS 240 RKDASSQVAK MQAPRALMST VEEMKMSFER EMEMSFEKER DRLMYHIQVQ QQQQPPVSGP 300 NSVAANAGGA PPQFVSTSLY VGDLDQNVTD SQLYDLFNQV GQVVSVRVCR DLSTRRSLGY 360 GYVNYSGPQD AARALEVLNF TPLNNKSIRI MYSHRDPSIR KSGTGNIFIK NLDKAIDHKA 420 LHETFSSFGN ILSCKIATDA TGQSKGYGFV QFDSEEAAHS AIDKLNGMLL NDKPVFVGHF 480 LRKQERDGNW NKTKFNNVYI KNISESTTED ELRKIFGEHG QITSVVVMRD GEGKSRCFGF 540 VNFEDPEAAA TAVEALNGKK IDEKEWYVGK AQKKYERELE LKERFEQSMK EASDKFQGVN 600 LYIKNLDDSI SDEKLKELFS EYGTVSSCKV MRDPDGNSRG SGFVAFSTAN EASRALAEMN 660 GKMVVSKPLY VALAQRKEER RARLQAQFSQ MRPVAMAPSV APRGMPMYPP GAPGLGQQFM 720 YGQAPPAIIP PQAGFGYQQQ LVPGIRPGGG PMPNFFVPMV QQGQQGQRPG GRRGAGPVQP 780 NQQPLPMMQQ HMLPRGRVYR YPPGRNMQEV PFSGVGSGML PVPYDMGAVP MRDAAGGQGV 840 PALATALANA STEQQRTMLG EALYPLVDQL EHESAAKVTG MLLEMDQTEV LHLLESPEAL 900 KAKVAEAMDV LRNVAQQQAN SSADQLSSLS LE

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence

MSSMKVHQFA RGLWEHEPSL TLGCTKRLRP LAPRLANTAA TSDTTTTLAP FDLKSFIRPE  60
SSPRKLGSSN QLQEKKDSPH PQVESHPGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ  120
ITAQLGKYGK IEGKNVFYWF QNHKARERQK QKRSSLGLSH SPRTPTSVIT TLGEVVVERE  180
EDNPYKRKGR SWEFDCLVEG DHSSSTSSVV CKLDNDDAIE GDEGDLGMQA VRSHRCKQPS  240
RKDASSQVAK MQAPRALMST VEEMKMSFER EMEMSFEKER DRLMYHIQVQ QQQQPPVSGP  300
NSVAANAGGA PPQFVSTSLY VGDLDQNVTD SQLYDLFNQV GQVVSVRVCR DLSTRRSLGY  360
GYVNYSGPQD AARALEVLNF TPLNNKSIRI MYSHRDPSIR KSGTGNIFIK NLDKAIDHKA  420
LHETFSSFGN ILSCKIATDA TGQSKGYGFV QFDSEEAAHS AIDKLNGMLL NDKPVFVGHF  480
LRKQERDGNW NKTKFNNVYI KNISESTTED ELRKIFGEHG QITSVVVMRD GEGKSRCFGF  540
VNFEDPEAAA TAVEALNGKK IDEKEWYVGK AQKKYERELE LKERFEQSMK EASDKFQGVN  600
LYIKNLDDSI SDEKLKELFS EYGTVSSCKV MRDPDGNSRG SGFVAFSTAN EASRALAEMN  660
GKMVVSKPLY VALAQRKEER RARLQAQFSQ MRPVAMAPSV APRGMPMYPP GAPGLGQQFM  720
YGQAPPAIIP PQAGFGYQQQ LVPGIRPGGG PMPNFFVPMV QQGQQGQRPG GRRGAGPVQP  780
NQQPLPMMQQ HMLPRGRVYR YPPGRNMQEV PFSGVGSGML PVPYDMGAVP MRDAAGGQGV  840
PALATALANA STEQQRTMLG EALYPLVDQL EHESAAKVTG MLLEMDQTEV LHLLESPEAL  900
KAKVAEAMDV LRNVAQQQAN SSADQLSSLS LE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-58	WOX family protein