PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012281.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 434aa    MW: 47036.2 Da    PI: 7.7587
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012281.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09112132526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+f+ + G C+yGd+CkF H+
  PCP012281.1 112 VCNFWVQ-GNCSYGDKCKFLHS 132
                  7******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MDVDGGGSKR VFHRLGGQQS DPSKNQKVCY HWRAGKCNRH PCPFLHRELP APPSQQGLNG  60
TASTKRHHAF AANTDGPSSR NRGPNNFNGG ASSTWGRTGG ANRVFVRKME KVCNFWVQGN  120
CSYGDKCKFL HSWSMGDSFS LLTQLEGHQK VVSGIALPSG SDKLYTGSKD QTVRVWDCAS  180
GQCMGVINLG GEVGCMISEG PWIFVGIPEA VKAWNTQTNS ELSLSGPVGQ VYAMVVGNDL  240
LFAGTQDGSI LAWKFNAVTN CFEPAASLIG HTLAVVSLVV GANRLYSGSM DNSIRVWSLE  300
TLQCIQTLTE HTAVVMSVLC WDQFLLSCSL DQQLKVWVAT QSGNLEATYT HTEENGLITL  360
CGMHDSEAKP VLLCACNDNT VRVYDLPSFS ERGKIFSKQE IRSIQVGPGG LFFTGDGTGQ  420
VKVWKWTEPA AVTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein