PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011906.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 1154aa MW: 129000 Da PI: 6.8314

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011906.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.8e-22	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l PCP011906.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfSMQPPA-QELVAKDLHDSVWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFI--RDEKSQL 221 99***************************9445444.38**********************************************..4567778 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PCP011906.1 222 LLGIRRA 228 9999997 PP
2	Auxin_resp	124.4	7.8e-41	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gtv+g+sdldpvrW++S+Wr+L+ PCP011906.1 253 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 335 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1154 aa Download sequence
MKVPTNGFLA NSGEAGEQKR INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK 60 ETDFIPNYTN LPSKLICMLH NVTLHADTET DEVYAQMTLQ PVNKYEKEAL LASDMGLRQS 120 RQPTEFFCKT LTASDTSTHG GFSVPRRAAE KILPPLDFSM QPPAQELVAK DLHDSVWTFR 180 HIYRGQPKRH LLTTGWSVFV SNKRLFAGDS VLFIRDEKSQ LLLGIRRANR QQPALSSSVI 240 SSDSMHIGIL AAAAHAAANN SPFTIFYNPR ASPSEFVVPL AKYNKAMYTQ VSLGMRFRMM 300 FETEESGVRR YMGTVTGISD LDPVRWKGSQ WRNLQVGWDE STAGDRPSRV SIWEIEPVIT 360 PFYICPPPFF RPKFPKQPGM PDDVSDIDNA FRRAMPWLGD EFGMKNSPSS FFPGLSLVQW 420 MNMQQNNQFS AAQSGFFPSM VPPTGLQNNL GTDDPSKLLS FQAPVLSLPS FQSNKSAPQN 480 HASQMQQPNV TWAQQQQLQQ LMYNPMNQQQ QSNPQQQQLQ QLLNSSANQH QQNQPQQQQQ 540 LQQLLNSSAN QHQQNHPQQQ QQLLQTPTNQ QLHNFSHQQQ QREPQQQQEP QNLMQHQQLH 600 QQQAQRHQHQ QQQLSQPNPV NDGSVAPNQV PGQNSQQPVM FSQHQQQQLL TGNTQQAVPS 660 SSKNSFQLPT GQQNSQLQQQ QLEPQPSLLQ RQQQAAQLQS SPHQLLQQSV SQKVQQQPQV 720 QQSSPQGISE QQLQLQLLQK FQQQQQPQLL SSSSSLLQPQ LLQQQLARQQ NQQLQQLPMT 780 QHHQQQLSGN SFSTDKLLNN FAAPSMMQSQ HMPSIQPQNQ HKPLAAIRSH SGLTEGDGPS 840 CSTSPSTNCQ MSPSNFLNRN QQGMAMLLGD SVAEPAHNLV QELQSKSDVW VKHEPPSSKG 900 PDHIKYKGTI TDQLEASSSG TSYCLDTSTI HQNYALPTFC LDGDVQSNPR SSLPFSANID 960 GLAPDTLLSR EYDSQKDLQN LLSNYGGTPR DIETELSTAA ISSQSFGAPN IPFKAGCSSD 1020 IPITDAGVLG NGSWANQAQR MRTYTKVQKR GSVGRCIDVN RYKGYDELRH DLARMFGIEG 1080 QLEDPHRTDW KLVYVDHENE ILLVGDDPWE EFVSCVQSIK ILSSVEVQQM SLDGDLGNIP 1140 VPNQASSGTH SGNA

Sequence ? help Back to Top

Protein Sequence Length: 1154 aa Download sequence

MKVPTNGFLA NSGEAGEQKR INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMQK  60
ETDFIPNYTN LPSKLICMLH NVTLHADTET DEVYAQMTLQ PVNKYEKEAL LASDMGLRQS  120
RQPTEFFCKT LTASDTSTHG GFSVPRRAAE KILPPLDFSM QPPAQELVAK DLHDSVWTFR  180
HIYRGQPKRH LLTTGWSVFV SNKRLFAGDS VLFIRDEKSQ LLLGIRRANR QQPALSSSVI  240
SSDSMHIGIL AAAAHAAANN SPFTIFYNPR ASPSEFVVPL AKYNKAMYTQ VSLGMRFRMM  300
FETEESGVRR YMGTVTGISD LDPVRWKGSQ WRNLQVGWDE STAGDRPSRV SIWEIEPVIT  360
PFYICPPPFF RPKFPKQPGM PDDVSDIDNA FRRAMPWLGD EFGMKNSPSS FFPGLSLVQW  420
MNMQQNNQFS AAQSGFFPSM VPPTGLQNNL GTDDPSKLLS FQAPVLSLPS FQSNKSAPQN  480
HASQMQQPNV TWAQQQQLQQ LMYNPMNQQQ QSNPQQQQLQ QLLNSSANQH QQNQPQQQQQ  540
LQQLLNSSAN QHQQNHPQQQ QQLLQTPTNQ QLHNFSHQQQ QREPQQQQEP QNLMQHQQLH  600
QQQAQRHQHQ QQQLSQPNPV NDGSVAPNQV PGQNSQQPVM FSQHQQQQLL TGNTQQAVPS  660
SSKNSFQLPT GQQNSQLQQQ QLEPQPSLLQ RQQQAAQLQS SPHQLLQQSV SQKVQQQPQV  720
QQSSPQGISE QQLQLQLLQK FQQQQQPQLL SSSSSLLQPQ LLQQQLARQQ NQQLQQLPMT  780
QHHQQQLSGN SFSTDKLLNN FAAPSMMQSQ HMPSIQPQNQ HKPLAAIRSH SGLTEGDGPS  840
CSTSPSTNCQ MSPSNFLNRN QQGMAMLLGD SVAEPAHNLV QELQSKSDVW VKHEPPSSKG  900
PDHIKYKGTI TDQLEASSSG TSYCLDTSTI HQNYALPTFC LDGDVQSNPR SSLPFSANID  960
GLAPDTLLSR EYDSQKDLQN LLSNYGGTPR DIETELSTAA ISSQSFGAPN IPFKAGCSSD  1020
IPITDAGVLG NGSWANQAQR MRTYTKVQKR GSVGRCIDVN RYKGYDELRH DLARMFGIEG  1080
QLEDPHRTDW KLVYVDHENE ILLVGDDPWE EFVSCVQSIK ILSSVEVQQM SLDGDLGNIP  1140
VPNQASSGTH SGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein