PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP011623.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 263aa    MW: 29723.7 Da    PI: 8.8538
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP011623.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002979101123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C k F ++  L  H++ H
  PCP011623.1  79 FECQYCFKEFANSQALGGHQNAH 101
                  89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MQSETNTVGA CAEKKLRLFG FELNPRRNEE TSMKGGRSAA EGGGDESVNS SNSVSHPIKL  60
ERYRENEKSS TSDPDDKKFE CQYCFKEFAN SQALGGHQNA HKKERMKKKR LQLQARKARI  120
NYYLQPFQTF HHHGSTVAPS WFYDPSSYLN PDHPFTLHEE SQISFNSFDQ SYGSSSGSHS  180
QVSNWYSVPP QQQFPSSQTG EQDHVINLNK FTLTQTDRSG ESRPIVFKPS PLSASTHQSC  240
KPLDLQLELG VPSKIRRSSR SEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-16C2H2 family protein