PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010214.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 580aa    MW: 62966 Da    PI: 4.9374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010214.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4617.3e-1412165741374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++L++cAeav++++l+la+al++++  la+ +  +m+++a+yf+eALa+r++r    +y    p++  +++ s+ l++   f+e++P+lkf+h+ta
  PCP010214.1 216 LVHTLMACAEAVQQENLKLADALVKHVGLLAAAQTGAMRKVATYFAEALARRIYR----IY----PQDCLDSSYSDILQM--HFYETCPYLKFAHFTA 303
                  689****************************************************....44....444443335555444..5*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dle+++L++
  PCP010214.1 304 NQAILEAFATATRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVASSLADLEPSMLDI 401
                  ************************************************************************************************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +++Ea+aVn+v++lh ll++ +++++    vL+ +k ++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsle +  +  +++ ++++++lgr+i
  PCP010214.1 402 RQDEAVAVNSVFELHGLLARAGAVDK----VLSSIKAMKPKIVTIVEQEANHNGPAFLDRFTEALHYYSSLFDSLEGS--SGPSQDLVMSEVYLGRQI 493
                  ******************88888877....*********************************************999..566999************ PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +nvvaceg +r+erhetl +Wr r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++gsl+lgW++rpL+++SaW+
  PCP010214.1 494 CNVVACEGGDRVERHETLTQWRGRMDSAGFHPVHLGSNAFKQASMLLALFAgVDGYRVEENNGSLMLGWHTRPLIVTSAWK 574
                  ********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    
MKREHCHSSA TASQNNSKPE YSSPPSSALN GKAKIWVDEQ GYSGSGGMDE LLAVLGYKVR  60
TDDMADVAEK LEQLEMVMGS AQEDGISQLS DTVHYNPSDL SGWVQSMLSE LNTGDDMPSI  120
NGPLLATGES STITSTKFCN SQLTRVFSDD SEYDLRAIPG VAAYPPAHSS SETESTRKRL  180
KTSIGSNSGG IEVSGAVSDP TRPLVLVDSQ ETGVQLVHTL MACAEAVQQE NLKLADALVK  240
HVGLLAAAQT GAMRKVATYF AEALARRIYR IYPQDCLDSS YSDILQMHFY ETCPYLKFAH  300
FTANQAILEA FATATRVHVI DFGLKQGMQW PALMQALALR PGGPPTFRLT GIGPPQPDNT  360
DALQQVGWKL AQLAETIGVE FEFRGFVASS LADLEPSMLD IRQDEAVAVN SVFELHGLLA  420
RAGAVDKVLS SIKAMKPKIV TIVEQEANHN GPAFLDRFTE ALHYYSSLFD SLEGSSGPSQ  480
DLVMSEVYLG RQICNVVACE GGDRVERHET LTQWRGRMDS AGFHPVHLGS NAFKQASMLL  540
ALFAGVDGYR VEENNGSLML GWHTRPLIVT SAWKLASSTE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein