PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009838.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 812aa MW: 90246.6 Da PI: 5.2843

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009838.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	234	254	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+a+ G+C +G++CkF H+ PCP009838.1 234 ICDFHAK-GWCIRGSSCKFVHV 254 699999.************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence
MTSALPGPKL PCVPWPTEIR EALSLSVPAN LHTRSHRTNV YSRALRMPHS GDDQSLEPAE 60 CSDSDIEEEE EDPELLEEEV EEEEEEEQEA EAEEEEMAAE ENMEDEAEGR VEVDMDISDS 120 PIRAHDHQNG QRTSVDLRDD GNSHLCNSEI MDAKAASSCR VGGEEKADAI PMRDNLGKEV 180 RGVVNPEDGM KQVDMRQRND RKQMDSRSGA FEIWTTITSP AVETSDRNKH PAIICDFHAK 240 GWCIRGSSCK FVHVKDNPIS SQPQPEGDIA NSTREVQLDE GLRDITERSR SPGFREPLAS 300 SSGSDFAFSS HLTSEKIRFL EHIGRQHQFH EKRKFPTVIE EESNVGESTV AKKLHSSKDD 360 PGFLSSLKDI ERDDQTRNWL SDKDKSIFMS GLHPEPGFFS NGSISSSGKY FIRKTSSHTS 420 GMGEPDGIWS QHVHRVHSSP LVNLALNSSS RNLSTTGLFP TSRISSWTGF SLPSSSSNLD 480 ASPHDTLKLF DRSRDYRSCT RLPPLLKSSS PFSSSELKNF PVTSVSLCSA EIKTKISSND 540 WEPSVPFWPS FILPHAFLSS SGRQYDPLRD SIELPKLANI SGETSFYPEG ATAVNKLHQQ 600 IHVESASGTT RTACEGDTNS MSSHNTYHEK VLDNSCYIRD HNSPGTEAET LGTSAVCQKG 660 TMTGEENPLG PSHLKGSTKQ NKASTAYGDS GHESDCSRHQ EDIKVDRFRD KNEVDGEHLT 720 DGNVQQESKA VRNFRAALVD LVKDMLKPKW RDGSLSKDAH NMIVKRAVEK IISAFQPHQI 780 PSTIETVMQY LSVCRPKISK LVEGYVVKYG KS

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence

MTSALPGPKL PCVPWPTEIR EALSLSVPAN LHTRSHRTNV YSRALRMPHS GDDQSLEPAE  60
CSDSDIEEEE EDPELLEEEV EEEEEEEQEA EAEEEEMAAE ENMEDEAEGR VEVDMDISDS  120
PIRAHDHQNG QRTSVDLRDD GNSHLCNSEI MDAKAASSCR VGGEEKADAI PMRDNLGKEV  180
RGVVNPEDGM KQVDMRQRND RKQMDSRSGA FEIWTTITSP AVETSDRNKH PAIICDFHAK  240
GWCIRGSSCK FVHVKDNPIS SQPQPEGDIA NSTREVQLDE GLRDITERSR SPGFREPLAS  300
SSGSDFAFSS HLTSEKIRFL EHIGRQHQFH EKRKFPTVIE EESNVGESTV AKKLHSSKDD  360
PGFLSSLKDI ERDDQTRNWL SDKDKSIFMS GLHPEPGFFS NGSISSSGKY FIRKTSSHTS  420
GMGEPDGIWS QHVHRVHSSP LVNLALNSSS RNLSTTGLFP TSRISSWTGF SLPSSSSNLD  480
ASPHDTLKLF DRSRDYRSCT RLPPLLKSSS PFSSSELKNF PVTSVSLCSA EIKTKISSND  540
WEPSVPFWPS FILPHAFLSS SGRQYDPLRD SIELPKLANI SGETSFYPEG ATAVNKLHQQ  600
IHVESASGTT RTACEGDTNS MSSHNTYHEK VLDNSCYIRD HNSPGTEAET LGTSAVCQKG  660
TMTGEENPLG PSHLKGSTKQ NKASTAYGDS GHESDCSRHQ EDIKVDRFRD KNEVDGEHLT  720
DGNVQQESKA VRNFRAALVD LVKDMLKPKW RDGSLSKDAH NMIVKRAVEK IISAFQPHQI  780
PSTIETVMQY LSVCRPKISK LVEGYVVKYG KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-41	C3H family protein