PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP009761.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 332aa    MW: 37465.9 Da    PI: 7.0909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP009761.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.6e-13247272126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++ G+C+yGd C+FaHg
  PCP009761.1 247 FKTELCNKWQEVGECPYGDHCQFAHG 272
                  79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MQNDTAYGGH ATSAMPQSHT DDAVFASLYS AIFDRKASTS QYDVESDHSS SSAHRHRQLY  60
NSLLVQDHQE MVNRHSRCLK RLQETSEEAD ALRRENVHLR SLNLELNKHL SLLIHASVQK  120
QFGSPSSVQT TAPFGIVNGL RDMTIDDKRA EQDMSDESPM SVIESEGGDA ENIDVERFSL  180
PKSISVRSDG YVKAAPQAGA STAARTRTAS RPRAATTFNA SQKVFVPRGV KEEEPPLELE  240
VYNQGMFKTE LCNKWQEVGE CPYGDHCQFA HGIEELRPVI RHPRYKTEVC RMVLSGVVCP  300
YGHRCHFRHA LTENEKLMVP NKPRQRQFNL DR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-74C3H family protein