PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP009715.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24600.7 Da PI: 7.3116 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.1 | 5.8e-28 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C ++p++ ++q++++ +++k++G++ +l+l++a ++ r+++++sl+yeA+ r+ +P yG+vg+++++ ++ +q++++ PCP009715.1 2 SCNGCRVLRKGCSDECEIRPCIewiksSESQANATLFLAKFYGRAGLLNLINAGSPALRPAIFKSLLYEACGRIVNPTYGSVGLMWSGGWDQCQAAVD 99 6*********************9999778899****************************************************************99 PP DUF260 94 lallke 99 ++l ++ PCP009715.1 100 AVLEGS 105 987665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MSCNGCRVLR KGCSDECEIR PCIEWIKSSE SQANATLFLA KFYGRAGLLN LINAGSPALR 60 PAIFKSLLYE ACGRIVNPTY GSVGLMWSGG WDQCQAAVDA VLEGSPIMGI DADVLKRNTN 120 PNLDPPHKSG DIRHVSRDTT SGNSSHNKAT TRNKLKRSVN RPKIQPDFAT GSNTKSLAQV 180 CNVPDPDDLY PIPQGNGSRG DQQAADDQDG EVGLELTLGL GLPPLTHLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-70 | LBD family protein |