PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009532.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 337aa MW: 37839.7 Da PI: 4.7574

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009532.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.6e-19	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV+vWFqNrRa++k PCP009532.1 65 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVSVWFQNRRARWK 118 56689************************************************9 PP
2	HD-ZIP_I/II	129.4	1.4e-41	64	156	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqv vWFqnrRAR+ktkqlE+dy +Lk++yd+lk + + L++++e+L +e+k+ PCP009532.1 64 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVSVWFQNRRARWKTKQLERDYGVLKANYDSLKCNYDILQHDNEALLKEIKQ 156 69**************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGTEGGGEEV GMKEKKDHEA AAAAAEGGNE QSPRNNHVYS REFQSMLEGL DEDGCVEEAG 60 RVSEKKRRLS VEQVKALEKN FEVENKLEPE RKVKLAQELG LQPRQVSVWF QNRRARWKTK 120 QLERDYGVLK ANYDSLKCNY DILQHDNEAL LKEIKQLKAK FQENTETTNP SVKEEKLLGK 180 DQSSYRAVHE GSRSPPPPPE SSVPETECKE LNFESFNNTS GVLEAVSLFP DFKDGSSDSD 240 SSAILNEDNS PNLTVSSSGI LQNHQLIKSP ASTSLKFNCC SSSLPSSSSM NCFPFQKSYQ 300 PSVKVEEHNF FSSEEACSFF SDEQAPSLQW YCPDQWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	94	KKRRLSVEQVKALEKNFEVENKLEPERKVK
2	113	121	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-58	HD-ZIP family protein