PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009489.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 389aa MW: 42136.2 Da PI: 9.2742

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009489.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.8	1.9e-15	22	114	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt e++ Liea++ ++er +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+k t PCP009489.1 22 WTVGETMILIEAKKMDDERRMKRSgggeggssssggteqttrsmgkPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERKIT 114 ***********96666655543355666677777777777777799***************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MAGQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGGGEG GSSSSGGTEQ 60 TTRSMGKPAE LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RKITNVGEGK 120 GEEGSASYWK LEKNDRKERN LPTNMVLQIY EALVDVVERR EAAAGGGYQI IGHQVVRGAS 180 VSGSNVGISP NIGYGLERPI ISTTGVHQQP SSSLPPPPPP PPPPVLQHHH QISVPTIAAL 240 PLLPPATLAA QPPPALQYAQ VMPTVDSDTS EHSDSPAKRR RRASGRGGGG GGGDQGRTSG 300 TVSASTSSEV GTAIAGGASV IAEALQGCEE REERRHREML SLHERRLQIE ETKTEINRQG 360 INGLIDAINK LANSIHALAS NKNQQPPPN

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MAGQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGGGEG GSSSSGGTEQ  60
TTRSMGKPAE LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RKITNVGEGK  120
GEEGSASYWK LEKNDRKERN LPTNMVLQIY EALVDVVERR EAAAGGGYQI IGHQVVRGAS  180
VSGSNVGISP NIGYGLERPI ISTTGVHQQP SSSLPPPPPP PPPPVLQHHH QISVPTIAAL  240
PLLPPATLAA QPPPALQYAQ VMPTVDSDTS EHSDSPAKRR RRASGRGGGG GGGDQGRTSG  300
TVSASTSSEV GTAIAGGASV IAEALQGCEE REERRHREML SLHERRLQIE ETKTEINRQG  360
INGLIDAINK LANSIHALAS NKNQQPPPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-57	Trihelix family protein