PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009307.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 587aa MW: 63871.7 Da PI: 7.0228

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009307.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	143	164	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F++ +L H+r+H PCP009307.1 143 VCCVCGKNFPSMKSLFGHMRSH 164 6********************9 PP
2	zf-C2H2	11.3	0.001	412	434	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C k+F+++ L H+++H PCP009307.1 412 YKCNLCAKCFPSHQALGGHMSSH 434 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MDIEHQETRF PPLAASDQER KPPKKLSGEE MESNNGGLFL KLKVAKPEPL GQNPQNFSAA 60 PLPEFTRFCE VCLKGFSSGK ALGGHMRMHV QANKELFNQS RKNTISSKPN NSKPRNSNVG 120 SSNAGGILGI GGNSSSISNM KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPTAKN 180 SSSSTVSDAV PDQSNRKAQE DQIESDETFF RSKSSVLNLS KTLPKWSQTA RRGRKSGSTG 240 FESDSDQSVS GLDSRSPRTV EEDEEQMEEA VHDLLMLAQA NPLEGGGADE TMCEVTNSNF 300 LITTNQDREG GLPYHGYTAP ATVGSTNKRK GASSEVKRSD KKWYDAYGGG FGQENSTVKN 360 FLKLGLMEEE NIGNHNNMED ELSDSQNSES IAVVRRKRRK MKLVDLEGRL RYKCNLCAKC 420 FPSHQALGGH MSSHNKLKGI TVAHSSMEDQ SASADDPAAE DRVHGDEAER VALDHQQHHQ 480 CKICNKTFPT GQALGGHKRC HWTGPTEQQQ QQQVVVVGPS EQLQQQLQAH SSQTIVGGGG 540 GGKVLNFDLN ELPPMEEDNQ EGAGTGYQYG GAAAAGCSTS SYNSVTN

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MDIEHQETRF PPLAASDQER KPPKKLSGEE MESNNGGLFL KLKVAKPEPL GQNPQNFSAA  60
PLPEFTRFCE VCLKGFSSGK ALGGHMRMHV QANKELFNQS RKNTISSKPN NSKPRNSNVG  120
SSNAGGILGI GGNSSSISNM KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPTAKN  180
SSSSTVSDAV PDQSNRKAQE DQIESDETFF RSKSSVLNLS KTLPKWSQTA RRGRKSGSTG  240
FESDSDQSVS GLDSRSPRTV EEDEEQMEEA VHDLLMLAQA NPLEGGGADE TMCEVTNSNF  300
LITTNQDREG GLPYHGYTAP ATVGSTNKRK GASSEVKRSD KKWYDAYGGG FGQENSTVKN  360
FLKLGLMEEE NIGNHNNMED ELSDSQNSES IAVVRRKRRK MKLVDLEGRL RYKCNLCAKC  420
FPSHQALGGH MSSHNKLKGI TVAHSSMEDQ SASADDPAAE DRVHGDEAER VALDHQQHHQ  480
CKICNKTFPT GQALGGHKRC HWTGPTEQQQ QQQVVVVGPS EQLQQQLQAH SSQTIVGGGG  540
GGKVLNFDLN ELPPMEEDNQ EGAGTGYQYG GAAAAGCSTS SYNSVTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	1e-20	C2H2 family protein