PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008680.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 544aa    MW: 60827.8 Da    PI: 4.564
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008680.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3611.7e-1101665371374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfsh 95 
                  lv+ Ll+cAeav  +d++la++lLa++   +sp gd++qR+  +f+ +L++rl+  +  ++  +++    + +    +++l a++l+++++P++ f++
  PCP008680.1 166 LVHMLLACAEAVGCRDTKLADSLLAQIWASVSPWGDSLQRVSYCFAMGLKSRLSLlQNVNINGTFNNDMMDVSVtsRDDKLEAFQLLNQTTPYIAFGF 263
                  689**************************************************99666677777765555443345999******************* PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlel 191
                  ++aN+aI +a++g+e +HiiD+++++ lQWp+L+++LasRpegpp +lRiTg+++   ++  ele+  + La+ A++lg+p efn++ +  + + l+ 
  PCP008680.1 264 MVANEAICQAAQGKEDLHIIDLGMEHTLQWPSLIRTLASRPEGPPkKLRITGLVE--DHNLFELEAGMRALAEEASSLGIPTEFNLISEPvKPSLLTR 359
                  *****************************************988889********..5699*************************743358999*** PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  e+L++++ Eal Vn++++lh+ ++es  + +   ++L+++k+l P v+++veq+a+hn++ Fl rfle+l++ysa+fdslea+lpr+s +r+k+Er+ 
  PCP008680.1 360 ENLDLREAEALFVNSIMHLHKYVKESRGSLK---AILQALKKLGPSVLTLVEQDANHNGPFFLGRFLESLHFYSAIFDSLEASLPRNSPQRMKIERQH 454
                  ***********************88776666...9*************************************************************** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+   ++qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  PCP008680.1 455 FADEIRNIVAFEGLNRIERHERADQWRRQLGRAGFQVMGLK--CTSQARMMLSVYGCDGYTLASEKGCLLLGWKGRPIMLASAWQ 537
                  *************************************9996..679**************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MEDFNAWLSF PLQENLNHDL AIRRFCPARV EQEQGGGGGG GGEWDEMLNE IEFSSSSHTT  60
STPCLPPSEV DDFVDSFINM DHCIDDHDIQ SMEKQRSSSS IEYYDQDGIE TFSMADDLYG  120
DVLMMMEEED DHVDMSGLAE DFRVAKTEMM PGDEEASHGV DQGLNLVHML LACAEAVGCR  180
DTKLADSLLA QIWASVSPWG DSLQRVSYCF AMGLKSRLSL LQNVNINGTF NNDMMDVSVT  240
SRDDKLEAFQ LLNQTTPYIA FGFMVANEAI CQAAQGKEDL HIIDLGMEHT LQWPSLIRTL  300
ASRPEGPPKK LRITGLVEDH NLFELEAGMR ALAEEASSLG IPTEFNLISE PVKPSLLTRE  360
NLDLREAEAL FVNSIMHLHK YVKESRGSLK AILQALKKLG PSVLTLVEQD ANHNGPFFLG  420
RFLESLHFYS AIFDSLEASL PRNSPQRMKI ERQHFADEIR NIVAFEGLNR IERHERADQW  480
RRQLGRAGFQ VMGLKCTSQA RMMLSVYGCD GYTLASEKGC LLLGWKGRPI MLASAWQAHG  540
VSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-80GRAS family protein