PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008555.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 896aa    MW: 98479 Da    PI: 5.833
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008555.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24140241199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++ +
  PCP008555.1 140 FCKTLTASDTSTHGGFSVPRRAAEKLfppldftMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVGAKRLRAGDSVLFI--RDEKSQ 233
                  99*********************999*****954444.4.48************************************************..457777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++v+r+
  PCP008555.1 234 LLIGVRRA 241
                  8****997 PP
2Auxin_resp1141.4e-37266349183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaas++s F+++YnPra++seFv++++ ++ka++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  PCP008555.1 266 AAHAASNRSSFTIFYNPRACPSEFVIPLATFQKAVYgTQLSIGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 349
                  79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    
MMSSVEEKLK TGCLLDEMKL LKELQDHSGS RKAINSELWH ACAGPLVCLP QVGSLSYYFP  60
QGHSEQVAVS TKRTATSQIP NYPNLPSQLL CQVQNVTLHA DKETDEIYAQ MILKPVNSEK  120
DVFPVSDFRT KPSKHPSEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLD FTMQPPTQEL  180
VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS VFVGAKRLRA GDSVLFIRDE KSQLLIGVRR  240
ANRQQTTLPS SVLSADSMHI GVLAAAAHAA SNRSSFTIFY NPRACPSEFV IPLATFQKAV  300
YGTQLSIGMR FGMMFETEES GKRRYMGTIV GISDLDPLRW PGSKWRNLQI EWDEPGCCDK  360
QKRVSSWEIE TPESLFIFPS LTSSLKRPMH SGFLGAETEW GNMIKRPFIR VPEIGNGNSF  420
PYPISNLCSE QLVNMLMKPQ LANHAGTLAA LWRESASNAD SVVDMKAMHA KINQKNPADG  480
VNANAPSHEI PPGKLNTAAK FGSQTPVGNG IEKMKLEPEF SADQLSQLNY VGHGIDDKLA  540
TGFASPYNLV NQLTFANQNQ DAAQLQTSPR PMQPPLESLL YHSQTDLPHS DFNGMNSSLP  600
FLDNDECMFY SPCQPFSGAL RSPGPLSAFG LPDSSAVLTE ANSSLTSIGQ DMWDNTIINS  660
SSLRDLSDES NNQSGIYGCP SVDVGSGLST VVDPSVSSTI LNDFSTLKNA NFQNSSDCLV  720
RNLSSSQDLQ SQITSASLGD SQAFSRQDLA DTSGGTSSSN VDLDESSLLQ NSSWHKVVVP  780
VRTYTKVQKT GSVGRSIDVT NFKNYEELCS AIECMFGLKG LLNDPRGSGW KLVYVDYEND  840
VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AAMQGMNGTM SEGGRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein