PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008509.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 422aa MW: 45980.8 Da PI: 8.4639

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008509.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.7	2.9e-11	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p PCP008509.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP
2	zf-CCCH	30.7	5.3e-10	82	101	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ PCP008509.1 82 YYLKTGTCKFGATCKFHHPR 101 8*****************96 PP
3	zf-CCCH	35.6	1.5e-11	125	147	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ PCP008509.1 125 ECAYYLRTGQCKFGGTCKFHHPQ 147 7********************97 PP
4	zf-CCCH	39	1.4e-12	282	308	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ PCP008509.1 282 PGQPECQFYMKTGDCKFGAVCRFHHPM 308 5789*********************95 PP
5	zf-CCCH	39.8	7.7e-13	329	354	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ PCP008509.1 329 GEPLCIFYSRYGICKFGPSCKFDHPM 354 789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TMEAGGYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LYYLKTGTCK FGATCKFHHP RDKAGITGKV ALNILGYPLR 120 PNEIECAYYL RTGQCKFGGT CKFHHPQPTN MMVSVHGSPV YPTVQSPTTP GQQSYAGGVT 180 NWSRASFIPS PRWQAPSNYA PLIVPQGVVS VPGWNTYSGQ LGSVSSAESQ QQTAGNSQVY 240 GTSRQGEPEN SGSQGGFSPY RSGSIPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKFGA 300 VCRFHHPMER LIPAPDCVLS PIGLPLRQGE PLCIFYSRYG ICKFGPSCKF DHPMDIFTYN 360 LSASSSTGAP ARRLLGSTSR AASLNLSSSG LVEAGSANPR RVSLSEPRQM PSAEDNNIDR 420 EE

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TMEAGGYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LYYLKTGTCK FGATCKFHHP RDKAGITGKV ALNILGYPLR  120
PNEIECAYYL RTGQCKFGGT CKFHHPQPTN MMVSVHGSPV YPTVQSPTTP GQQSYAGGVT  180
NWSRASFIPS PRWQAPSNYA PLIVPQGVVS VPGWNTYSGQ LGSVSSAESQ QQTAGNSQVY  240
GTSRQGEPEN SGSQGGFSPY RSGSIPVGFY ALQRENVFPE RPGQPECQFY MKTGDCKFGA  300
VCRFHHPMER LIPAPDCVLS PIGLPLRQGE PLCIFYSRYG ICKFGPSCKF DHPMDIFTYN  360
LSASSSTGAP ARRLLGSTSR AASLNLSSSG LVEAGSANPR RVSLSEPRQM PSAEDNNIDR  420
EE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-172	C3H family protein