PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008325.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YC
Protein Properties Length: 367aa    MW: 40571.4 Da    PI: 3.848
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008325.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.62.7e-131222051597
        NF-YC  15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                  +  + e+P  r+k+i+k d d+++i +ea  l+s + +lf+  l+ rs   a e kr+ +k   +  av+r   + dfl+d+ p
  PCP008325.1 122 NRIRPEFPNGRVKRIMKLDRDINKINSEALLLVSYSAQLFLEFLAERSAEVATERKRKVVKLEHMRVAVKRHRpTCDFLIDELP 205
                  5556789**************************************************************9975489*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MAEEEIAARE EQNPAGEEEN PAQDEEENPA DEEENPAVEE ENPAGEEDEE EIPADEEENP  60
AVEEGNPAAE EENLAGEEES PAQEEEENPA QEEEEEEENP VREKEKAAKG KGQVGAEEGN  120
GNRIRPEFPN GRVKRIMKLD RDINKINSEA LLLVSYSAQL FLEFLAERSA EVATERKRKV  180
VKLEHMRVAV KRHRPTCDFL IDELPVPSQP FDHPAIDRSQ GHSVASSSAP AKRDRSRTAA  240
ARPAPAGTRR IDGFFHKLTK KAPIQTEETP IEIDEAPIES DDAPIEIDET PIESDDAPIE  300
SDDAPIENDE APIENDEAPI ESDDAPIESD DVPIEVDDAA IESDEASMEN EEPLNETHGA  360
PIEIHES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-42NF-YC family protein