PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007033.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 1240aa MW: 140395 Da PI: 6.6697

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007033.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.3	6.7e-12	71	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ ++k+ + g ++++e Aa ++ a++k++g PCP007033.1 71 SVYRGVTRHRWTGRFEAHLWDkSSWNNvQNKKGRQGAYDSEEAAAHTYDLAALKYWG 127 78*****************777799988888********************98 PP
2	AP2	53.8	4.9e-17	170	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I +s +k+ +lg+++t eeAa+a+++a+ +++g PCP007033.1 170 SKYRGVARHHHNGRWEARIGRVSG---NKYLYLGTYDTQEEAAAAYDKAAIEYRG 221 89**99******999754...5***********************98 PP
3	FAR1	45.6	2.3e-14	477	551	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGFs+ + + ++ k +g i++ +f Cs+e +++++ ++ C+a+l++++++ + w+ tk++++HnH+++ PCP007033.1 477 LYDAYARNVGFSTHVGQFTRAKPDGPIVTWDFACSREVFKRKNVES--------------CNAMLRIERKDANSWVATKFVEDHNHSMV 551 59************************************999877..............************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1240 aa Download sequence
MKRSPSFSCS SSSSSCAGPE IPNHCVQAEI QKPKPKPKRV RKKRKTSGAA AEEKCQNANA 60 PNSGTAGGRS SVYRGVTRHR WTGRFEAHLW DKSSWNNVQN KKGRQGAYDS EEAAAHTYDL 120 AALKYWGPGT VLNFPLETYT KEIEEMQKAT REEYLASLRR RSSGFSRGVS KYRGVARHHH 180 NGRWEARIGR VSGNKYLYLG TYDTQEEAAA AYDKAAIEYR GTNAVTNFDI SNYIDRVKKK 240 IHPLDHQESE GQPPSTCSNI GPPQEEEEEV DRKVHPLLPQ QQQQQEQRKV HQLQPQQQQQ 300 EQNQELKQER MISLQLHYPH LLHCIGSNTM EQVMDPEHAK EHQFSWNFLD TGMMTQQLPV 360 PEDIHLDKSL ELPDLFEDLG FEENFDLIFG AAGDGSLGGL MESAGSGADQ KTVMETEVLV 420 DAEGENMEHH VAESNEPDKG QKQNVNENFS GREVNIQDDS KPHVGMEFES EDAAKILYDA 480 YARNVGFSTH VGQFTRAKPD GPIVTWDFAC SREVFKRKNV ESCNAMLRIE RKDANSWVAT 540 KFVEDHNHSM VSSSKVHYLR PRRHFAGATK NTSETLDATT DSYFSMDGNH VSYEPNRGGR 600 SVSPVEPNHS ARILRPVNCI RPCSRKRILG RDAQNLLNYF KKMQAENPGF FYAIQLDDEN 660 RMTNVFWVDA RSRTAYNHFG DAVIFDTMYR PNHYQVPFAP FTGVNHHGQK VLFGCALLLD 720 ESESNFTWLF RTWLSAMNDR PPVSITTDQD RAIQVAVAQV FPETRHCICK WHILREGQER 780 LAHIYLAHPS FYGELYSCIN FSETIEDFES SWASLLDTYD LLRNDWLQAV YNARKQWAPV 840 YFHGTFFAAI SSNQGISSFF DGYVNQQTSI PMFFKQYERA LEHSLEKEIE ADIDTMCTTP 900 VLKTPSPMEQ QAANLYTKKV FAKFQEELVE TFVYTANKIE GDGIVSKYRV AKYEHDDKAY 960 MVILNVSEIK ASCSCQMFEY SGILCRHILT VFTVTNVLTL PSHYILKRWT RNAKSWVGLD 1020 EQSSDLQGIE TLTMRFNNLC REAIKFAEEG AVGVETYNAA MSALREGGKK IAVVKKNVAK 1080 VTPPSSQASG NAQEDSLKTS QLPPGEIAPS LWPWQEALPH RFNLNDGGVP AADLNQPSMA 1140 PVSIHPDGGS LDSTLQDYGK NPAGEKEVQF RLTRVTLEPM LKSMAYISQQ LSAPANRVAV 1200 INLKLQDTKT TSGEMEVKFQ VSRDTLGSML RSMTYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 1240 aa Download sequence

MKRSPSFSCS SSSSSCAGPE IPNHCVQAEI QKPKPKPKRV RKKRKTSGAA AEEKCQNANA  60
PNSGTAGGRS SVYRGVTRHR WTGRFEAHLW DKSSWNNVQN KKGRQGAYDS EEAAAHTYDL  120
AALKYWGPGT VLNFPLETYT KEIEEMQKAT REEYLASLRR RSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VSGNKYLYLG TYDTQEEAAA AYDKAAIEYR GTNAVTNFDI SNYIDRVKKK  240
IHPLDHQESE GQPPSTCSNI GPPQEEEEEV DRKVHPLLPQ QQQQQEQRKV HQLQPQQQQQ  300
EQNQELKQER MISLQLHYPH LLHCIGSNTM EQVMDPEHAK EHQFSWNFLD TGMMTQQLPV  360
PEDIHLDKSL ELPDLFEDLG FEENFDLIFG AAGDGSLGGL MESAGSGADQ KTVMETEVLV  420
DAEGENMEHH VAESNEPDKG QKQNVNENFS GREVNIQDDS KPHVGMEFES EDAAKILYDA  480
YARNVGFSTH VGQFTRAKPD GPIVTWDFAC SREVFKRKNV ESCNAMLRIE RKDANSWVAT  540
KFVEDHNHSM VSSSKVHYLR PRRHFAGATK NTSETLDATT DSYFSMDGNH VSYEPNRGGR  600
SVSPVEPNHS ARILRPVNCI RPCSRKRILG RDAQNLLNYF KKMQAENPGF FYAIQLDDEN  660
RMTNVFWVDA RSRTAYNHFG DAVIFDTMYR PNHYQVPFAP FTGVNHHGQK VLFGCALLLD  720
ESESNFTWLF RTWLSAMNDR PPVSITTDQD RAIQVAVAQV FPETRHCICK WHILREGQER  780
LAHIYLAHPS FYGELYSCIN FSETIEDFES SWASLLDTYD LLRNDWLQAV YNARKQWAPV  840
YFHGTFFAAI SSNQGISSFF DGYVNQQTSI PMFFKQYERA LEHSLEKEIE ADIDTMCTTP  900
VLKTPSPMEQ QAANLYTKKV FAKFQEELVE TFVYTANKIE GDGIVSKYRV AKYEHDDKAY  960
MVILNVSEIK ASCSCQMFEY SGILCRHILT VFTVTNVLTL PSHYILKRWT RNAKSWVGLD  1020
EQSSDLQGIE TLTMRFNNLC REAIKFAEEG AVGVETYNAA MSALREGGKK IAVVKKNVAK  1080
VTPPSSQASG NAQEDSLKTS QLPPGEIAPS LWPWQEALPH RFNLNDGGVP AADLNQPSMA  1140
PVSIHPDGGS LDSTLQDYGK NPAGEKEVQF RLTRVTLEPM LKSMAYISQQ LSAPANRVAV  1200
INLKLQDTKT TSGEMEVKFQ VSRDTLGSML RSMTYIREQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	43	KPKPKPKRVRKK
2	37	45	PKRVRKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein