PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006958.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 2085aa    MW: 233880 Da    PI: 8.4087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006958.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.3e-13101210891192
                   HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92  
                   + ++rl+lp  f+++ ++kk  +kt     +    W+vk+  r ++g+  +++GW+eF+  ngLke D+vvF+++g++ f+ 
  PCP006958.1 1012 GCTKRLRLPPAFCRNLSEKK--PKTAL-IKSCLGYWDVKV-GRSGDGKLAFEEGWEEFAMCNGLKEEDIVVFEHKGDMVFNV 1089
                   55689********8887664..44455.5556678*****.4555555**************************99998843 PP
2B345.91e-14115512351086
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE........EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr........yvltkGWkeFvkangLkegDfvvFkldg 86  
                     +++ +++p +fa+e+g+ + +  +l+l+d++gr W v l  +++++r         + tkGW +F  +n LkegD+++Fkl++
  PCP006958.1 1155 CVSKAYVTIPARFARENGLHSIS--KLILNDPRGRLWPVSL--DRRGSRvkavdhrlAIKTKGWYKFYASNSLKEGDVCLFKLKR 1235
                   5567889**********998544..8***************..777777556664444445*********************976 PP
3B350.83e-1612841369899
                   -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3    8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                   s  l+s rl +p +f+++++g +  s  + l  +sg  W+v+l   ++ g+ +l  GW  Fv+++ ++ gDf+vF++d + +f  +v +f++
  PCP006958.1 1284 SADLSSERLKIPDRFMRHMEGRT--SGLVLLFGPSGSAWSVEL--IQQNGGLFLHHGWPAFVRDHYVECGDFLVFSYDADLCF--TVLIFDQ 1369
                   56788999********8888884..4489999***********..888889**************************999999..9999987 PP
4B342.11.6e-13151315921496
                   T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                     l +p kf  +h   ++++++++l++ +g+sW+v+    ++   +++l +GW  Fv+ n+++ gD+++F+l+++ ef  +v++
  PCP006958.1 1513 YTLNIPYKFSVAHL--PNCKVKIVLQNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRCNDIQLGDICIFELVRECEF--RVHI 1592
                   4689*****99996..45999***************9445555667999************************99999..4444 PP
5B340.74.2e-1317221814196
                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3    1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                   f+k++++ + + s  l +p +f +e+  +     ++++ l++++g  W+v+ i + k++  +++ +GW  Fv+ n+++ gD+++F+l+g++e  + 
  PCP006958.1 1722 FVKIMKKFNISGSYTLKVPYQFSTEYlpN----YKTEILLRNSKGGCWTVNSIPDSKGRVvHTFCGGWMAFVRGNDINFGDVCIFELVGKDE--MQ 1811
                   6777877778888899**********533....4468***************7655555479999**********************98544..45 PP

                   EEE CS
           B3   94 vkv 96  
                   v++
  PCP006958.1 1812 VHI 1814
                   555 PP
6B356.64.7e-18184319231299
                   HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                   +++ l++p  f++++gg   + ++ tl+++sg  W vkl  ++k ++ +++kGWk Fvk++ L+ gDf+vF++ g sef   v++f++
  PCP006958.1 1843 SKH-LRIPSAFIKNFGGR--SLRKCTLRNPSGDCWGVKL--KQKEDGLFFRKGWKVFVKDHFLEHGDFLVFEYGGGSEF--DVTIFDR 1923
                   444.9*******999988..5568***************..9*******************************988888..9999997 PP
7B339.31.2e-1219812073798
                   .-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3    7 psdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                   +   +++++l++pk+ a +       g++  +  t+tl+d++grsW  +l + + + r+ +++GW   v+an++  gD +v+++++  ++ l +++
  PCP006958.1 1981 TLKKFNRNILTIPKHVAIAEglvsdaGLP--SRETVTLQDPTGRSWLAQL-HVRADHRVQMARGWAACVRANEISPGDDIVLEFVE--RGVLQLHI 2071
                   35789999********9888888886666..4459***************.56666789999*********************876..55568888 PP

                   E- CS
           B3   97 fr 98  
                   fr
  PCP006958.1 2072 FR 2073
                   87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 2085 aa     Download sequence    
MHLSVWKPIS HCAALLMEKK TRRKRDNGSG LAVDAKRKPS VLRQLQENRL REALEEASED  60
GLLFKSQDID YDQTPNQDGS FGRSRSLARL HAQKEFLCAT ALAADRTFST EDSIPHLREA  120
FNKFLTMYPK FQFTEKIDHL RAEEYSHLSE SLAKVCLDYC GFGLFSNLQT ELYWETCSFT  180
LSEIIANLSN HALYGGAETG CVEHDIKTRI MDYLNIPENE YGLVFTVSRG SAFKLLAESY  240
PFGTNKKLLT MFDHESQSVN WMAQKAKEKG AKVYSSWFKW PTLKLCSREL KKQIVNKKRR  300
KKDSATGLFV FPVQSRVTGA KYSYQWMALA QQNNWHVLLD AGSLGPKDMD SLGLSLFRPD  360
FIITSFYRVF GSDPTGFGCL LIKKSVMASL QSQGGQTGTG IVRILPVFPQ CLSDSVDGLD  420
GLGGIKNDAV NCNEELVLET HGESHMPAFS GVFTSNQVRD CFETEMDQDS DRDGAESILI  480
GEVMKSPIFS EDESSDNSYW IDLGQSPFGS DHSDQHTRLK TGSPLPPTWF SGRKINKIFS  540
PKVTPRLPKS PIYDDDKGAN LRVHEDPVLS FDAAVLSVSH EPYRVKGIPE EEMFAETDAA  600
SGNGREIQEE PEIREDSMAN NSKLLSTEDG FRLNNQTSGL KHSNFENSST SEIFQESKDS  660
AIRRETEGDF RLLGRRETKR FSGGRFFGLE EGDREPSMGH RLSFTIEDDH RGKSSLILEP  720
GETSMTILGD DEFMSEREYG DEQEWERREP EIVCRYLDHV NMLGLNKTTL RLRYLINWLV  780
TSLLQLRLPG SDEGAEVPLV QIYGPKIKYE RGAAVAFNVR QSSGRGLVHP EVVQRMAEKN  840
GISLGVGILS HVRIVDGPKQ QHCGALDQAD TSLCKPMVNG RRGGKNMFFR VEVVTASLGF  900
LTNFEDVYKM WAFVAKLLDS SFAEVVLDEL PSVEESETLS AVVPGGAPAQ YELEVQAPAN  960
SIHAFQPLYR DPELRWRATI GPSTLYKHCI QLDSWLRQFL RSPSFLSYLA TGCTKRLRLP  1020
PAFCRNLSEK KPKTALIKSC LGYWDVKVGR SGDGKLAFEE GWEEFAMCNG LKEEDIVVFE  1080
HKGDMVFNVV AYDSGGCEKE YPPDSGVAAN RMATSSKARS NKHRRGSKGK GLLKTTKWLT  1140
SGKLFKIKMA KTHGCVSKAY VTIPARFARE NGLHSISKLI LNDPRGRLWP VSLDRRGSRV  1200
KAVDHRLAIK TKGWYKFYAS NSLKEGDVCL FKLKRMSMSI STAFMDVEIT RRRSESASLK  1260
LAELISMAKE ARNVRSPHFF AFYSADLSSE RLKIPDRFMR HMEGRTSGLV LLFGPSGSAW  1320
SVELIQQNGG LFLHHGWPAF VRDHYVECGD FLVFSYDADL CFTVLIFDQS ACEKEAAFRF  1380
GYGQDSSNFE KCKYVGRKRG REEAASSGYK LVDGAAKKMR NDLSQVQSEC IDEGREDATC  1440
SKETNPHEKP GLDVVPNTAK ASIQNMCGIG DGLNVSGRVC MQMSSAHEAA PVFSSSNPYF  1500
VRIIKSFNIS GSYTLNIPYK FSVAHLPNCK VKIVLQNWKG ESWTVNSVPS TRVHTSHTLC  1560
GGWMAFVRCN DIQLGDICIF ELVRECEFRV HIQKGETSSW LSPGLAVTTH KTIKGLSKKI  1620
KGNSPKVHSK SIREIADKLS SKMYQDPAFV NDTRKYGSTS RSLPKVALSQ SKVASKKLVE  1680
TVNRRKKVVE DELDSQKRGL RIKLTLDEER VARSFTSCFP NFVKIMKKFN ISGSYTLKVP  1740
YQFSTEYLPN YKTEILLRNS KGGCWTVNSI PDSKGRVVHT FCGGWMAFVR GNDINFGDVC  1800
IFELVGKDEM QVHISGVGAN MDEKLKEALE TPAFRALLVG DFSKHLRIPS AFIKNFGGRS  1860
LRKCTLRNPS GDCWGVKLKQ KEDGLFFRKG WKVFVKDHFL EHGDFLVFEY GGGSEFDVTI  1920
FDRTCCEKNV EEAAKRASSN LADSRTVDDV VRIERPASVH LAETSTGSVL FKSENTWFTK  1980
TLKKFNRNIL TIPKHVAIAE GLVSDAGLPS RETVTLQDPT GRSWLAQLHV RADHRVQMAR  2040
GWAACVRANE ISPGDDIVLE FVERGVLQLH IFRGNVLLTS PDVSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRRK
2297302KKRRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-18B3 family protein