PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006727.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 324aa MW: 36404.9 Da PI: 4.7138

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006727.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k PCP006727.1 89 KKRRLTADQVRFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWK 142 56689************************************************9 PP
2	HD-ZIP_I/II	128.2	3.4e-41	89	178	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+++qv++LE+sF+ e+kLeperKv la++Lglqprqva+WFqnrRAR+ktk+lEkdye+L+++y++lk++ e+L+ke+++L++e+ PCP006727.1 89 KKRRLTADQVRFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWKTKHLEKDYEVLQANYNNLKANCESLSKENDKLKAEV 178 9**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MAGGRVYGGR NSSVLSALLQ NQKSSEPLDS LFLSGSSNSS SSSFLGSRSM VSFEDVRGGS 60 GLNRSLFHQY EHEDNGEDDL DEYPHQPGKK RRLTADQVRF LEKSFDVENK LEPERKVLLA 120 KDLGLQPRQV AIWFQNRRAR WKTKHLEKDY EVLQANYNNL KANCESLSKE NDKLKAEVLV 180 LSDKLQLKEK VRGNSELSDT NQLSQEPPHK PIADSASEGE VSKVSAVASK QEDHSSGRSD 240 IFDSDSPHYT DGVHSSLMEP GDSSYVLEPE QSDLSQDEED NFSKSLLPPY IFPKLEDVDY 300 SDTPANSCNF GFPVEDHAFW SWSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-44	HD-ZIP family protein