PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006709.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 423aa MW: 45137.5 Da PI: 7.5008

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006709.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.8	3.1e-41	94	211	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + PCP006709.1 94 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyysp 191 789******************************************************************99987777777777555555555556555 PP TCP 89 ...................k 89 + PCP006709.1 192 nfslqqnqrrslfqgiglsS 211 55565555434444444432 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEGGDDHQLH HHHHHYQQHQ QQHHHRPNFP FQLLEKKELD HQEAASCSNT TSPYPTLAIT 60 TVDPTTTNNT VSTATATTTS ALQASSPEAS KKPPPKRTST KDRHTKVDGR GRRIRMPALC 120 AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSMSV 180 PSQLRSSYYS PNFSLQQNQR RSLFQGIGLS SSDSSSTLLN FQTNTMHASM LQAKQELRDT 240 VSLDLSEAAS AGEGSLGGRK RRPPEQDLNQ MGGGGGGGGG GYLLQSSTGA VPASHPHSQI 300 PANFWMLANS NNQVMSGDPI WTFPASVNNS GMYRGTMPGG LHFMNFPAPV TVLPNQQQLS 360 GSGGGGGGND GDNMSDGQLN MLAGLNPYRH MSGTGVSDSQ QASGSHSHHG GGDDRHDSTS 420 HHS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEGGDDHQLH HHHHHYQQHQ QQHHHRPNFP FQLLEKKELD HQEAASCSNT TSPYPTLAIT  60
TVDPTTTNNT VSTATATTTS ALQASSPEAS KKPPPKRTST KDRHTKVDGR GRRIRMPALC  120
AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSMSV  180
PSQLRSSYYS PNFSLQQNQR RSLFQGIGLS SSDSSSTLLN FQTNTMHASM LQAKQELRDT  240
VSLDLSEAAS AGEGSLGGRK RRPPEQDLNQ MGGGGGGGGG GYLLQSSTGA VPASHPHSQI  300
PANFWMLANS NNQVMSGDPI WTFPASVNNS GMYRGTMPGG LHFMNFPAPV TVLPNQQQLS  360
GSGGGGGGND GDNMSDGQLN MLAGLNPYRH MSGTGVSDSQ QASGSHSHHG GGDDRHDSTS  420
HHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	1e-45	TCP family protein