PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006435.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 263aa    MW: 28620.1 Da    PI: 6.5912
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006435.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-428106199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk++Gasnv k+l++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l  +k
  PCP006435.1   8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVYGASNVAKILNELNVAHREDAVTSLAYEAEARLRDPVYGCVGFISILQNRLKQVQTDLYNAK 105
                  7********************************************************************************************98887 PP

       DUF260  99 e 99 
                  +
  PCP006435.1 106 K 106
                  6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HKVYGASNVA KILNELNVAH  60
REDAVTSLAY EAEARLRDPV YGCVGFISIL QNRLKQVQTD LYNAKKDLSA YIGPQAMMIP  120
VFPPPQQTDM NGSVPMLGVS TGPPPQLGCG GGQLVIRDQH QQQLFEAHQQ DLVRFNINGM  180
DTAASSVTGN GFNQIPAAAA SNGVVSGSLG LGGNFDNNHY NQIQQQATAH HQNSLEYQLQ  240
AHLMLQPQPA AEQSQQKSEG EES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-65LBD family protein