PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005944.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 1035aa MW: 114144 Da PI: 6.155

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005944.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.1	3.2e-27	588	637	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI WP+Rki+++ PCP005944.1 588 KNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGITKWPSRKISKV 637 89*********************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1035 aa Download sequence
MDYHFLPKDK GNNHWASAGA AVENLASFDG GTTIQIPEDM FNNISELMNF DTYSGWCSPA 60 ATDQIAASLG VPSCTSVTYA PFYALNFVEP NGEQSGAGTF NVGENFSCGD KIVFDQMGTP 120 QYGVSTDSDE ANDSAIKLNN SSFQHNNPMD MERYMIYRPP GLSLNEKMLK ALSMFKETSG 180 GGILAQLWVP MKHGDQYLLS TCEQPYLLDH ILAGYREVSR MFTFSTKGKQ SSILGLPGRV 240 FVSKIPEWTS NVIFYNKTEY LRVDYAANHQ VRGSIALPIF DFDMEMSCCA VLELVSTKAK 300 PNFDTEMEIV CGALQAVNLR TNAPLRLLPQ CLSENQRAAL TEISDVLRVV CHAHLLPLAM 360 TWIPCCYSEG NGDEIKRVRA KGGITNSNEK CIICIEETAC YVNDSRMQGF VHACAEHHLE 420 EGEGIAGKAL QSNHPFFIND VKVYDICEYP LVHHARKYGL NAAVAIRLRS TYTGDDDYIL 480 EFFLPVDVKG STEQQLLLNN LSGTMQKICK SLRTASDAEL VGLEGTNTRF PQRHSRTTLS 540 DSEMKSAKNV TFNVFNRKNG EIKRHNPPGK APSGSRRQVE KKRTTTGKNV SLSVLQQYFS 600 GSLKDAAKSI GVCPTTLKRI CRQHGITKWP SRKISKVNRS LEKIQTVLDS VQGVDGGLKY 660 DPTTGGFVAT GSIIQEVDAP QNILFPKKNL HVENSEPVTQ DLVSVSSLSI NNGEILTVKL 720 GKDGSCVPTS HENEVKNQSI PLMPQGDSKP IAIDFGSCDP TNRGTTPDTK GSYLAKEVNN 780 WGYTQNSDCH FVSQSSGFLV ATDEMDMGVH GNGGIVEYNQ HSSSSLTDSS IGFDSIMQGY 840 SSSSQSFEEH KHPQVETTTG ENGSKIIVKA TYIEDIIRFK FEPSLGCLQL YEEVAKRLKL 900 QNGTFQLRYL DDEEQWVMLV CDADLQECLE IMDDIGTRCV KFLVRDITFG MGSSGSSNFL 960 GSFTPTDGVN DAPALNLADV RIAMGHFSGT EDCDVRCTGN CRRIRHLAYT LFFLSFNLSG 1020 DGHSRVKHSQ LAKRG

Sequence ? help Back to Top

Protein Sequence Length: 1035 aa Download sequence

MDYHFLPKDK GNNHWASAGA AVENLASFDG GTTIQIPEDM FNNISELMNF DTYSGWCSPA  60
ATDQIAASLG VPSCTSVTYA PFYALNFVEP NGEQSGAGTF NVGENFSCGD KIVFDQMGTP  120
QYGVSTDSDE ANDSAIKLNN SSFQHNNPMD MERYMIYRPP GLSLNEKMLK ALSMFKETSG  180
GGILAQLWVP MKHGDQYLLS TCEQPYLLDH ILAGYREVSR MFTFSTKGKQ SSILGLPGRV  240
FVSKIPEWTS NVIFYNKTEY LRVDYAANHQ VRGSIALPIF DFDMEMSCCA VLELVSTKAK  300
PNFDTEMEIV CGALQAVNLR TNAPLRLLPQ CLSENQRAAL TEISDVLRVV CHAHLLPLAM  360
TWIPCCYSEG NGDEIKRVRA KGGITNSNEK CIICIEETAC YVNDSRMQGF VHACAEHHLE  420
EGEGIAGKAL QSNHPFFIND VKVYDICEYP LVHHARKYGL NAAVAIRLRS TYTGDDDYIL  480
EFFLPVDVKG STEQQLLLNN LSGTMQKICK SLRTASDAEL VGLEGTNTRF PQRHSRTTLS  540
DSEMKSAKNV TFNVFNRKNG EIKRHNPPGK APSGSRRQVE KKRTTTGKNV SLSVLQQYFS  600
GSLKDAAKSI GVCPTTLKRI CRQHGITKWP SRKISKVNRS LEKIQTVLDS VQGVDGGLKY  660
DPTTGGFVAT GSIIQEVDAP QNILFPKKNL HVENSEPVTQ DLVSVSSLSI NNGEILTVKL  720
GKDGSCVPTS HENEVKNQSI PLMPQGDSKP IAIDFGSCDP TNRGTTPDTK GSYLAKEVNN  780
WGYTQNSDCH FVSQSSGFLV ATDEMDMGVH GNGGIVEYNQ HSSSSLTDSS IGFDSIMQGY  840
SSSSQSFEEH KHPQVETTTG ENGSKIIVKA TYIEDIIRFK FEPSLGCLQL YEEVAKRLKL  900
QNGTFQLRYL DDEEQWVMLV CDADLQECLE IMDDIGTRCV KFLVRDITFG MGSSGSSNFL  960
GSFTPTDGVN DAPALNLADV RIAMGHFSGT EDCDVRCTGN CRRIRHLAYT LFFLSFNLSG  1020
DGHSRVKHSQ LAKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein