PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005404.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 1237aa MW: 138566 Da PI: 7.8436

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005404.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1.1e-18	1081	1135	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k PCP005404.1 1081 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 1135 78889************************************************98 PP
2	HD-ZIP_I/II	115.2	3.8e-37	1081	1169	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ PCP005404.1 1081 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 1169 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 1237 aa Download sequence
MGRRRGREDL RVPNFQIHNQ PIIQAQNPYY DAIVSHRRVK SVEGLDLQGF HGRGSCRKPT 60 RMSGSWAKLA CCTWHPQSQL CNLDKVDIFY MMIDKEFPFQ CFSGNGLRSA IAFKAEKGYR 120 NALGRKMRFS NFLFSTVSRL CFRPKHSLVK NNLEEVDIFG IASISDRSKL LNKVSALVGY 180 DSLDDLIENE RAEKQSGSSP RVELYDGTIS FSERMLLSTQ SGEGFLSDTM CEEQSATVVI 240 EENSHQTVPV EESSNKVLLK SQNDTGSVQF SLDSSISCIP GITKKRCRQL EDCGFHTLRQ 300 LLHHFPRTYA DLQNAQMKID DGQYLIFIGK VLSSRGIKAS SSFSFIEVVV GCEIMDDEST 360 EHLNDSADSR RKKTISLHLK KFFRGARFTS LPFLRLVEGK HKEGDFVCVS GKVRTMPAKG 420 HYEMREYNID VLKDENEVSF HAKGRPYPIY PSKGGLDPNV LRDIIARVAQ VLAVDVDPIP 480 KNITQDFGLL GLHDAYKGIH EPKSMEEADL ARKRLIFDEF FYLQLARLYQ MLEGLGTQIE 540 KDGLLDKYRK PESSAAYMKE WSILTKKFSK ALPYTLTPSQ LTAVSEIIWD LRQPVPMNRL 600 LQGDVGCGKT VVAFLACMEV IGSGYQGLRT GEISMVVGTT SLISDKIEFF ALRIAVVDEQ 660 HRFGVIQRGR FNSKLYYTSI NSRMVAASSD VTSKGDNHMA PHVLAMSATP IPRTLALALY 720 GDMSLTQITD LPPGRIPVET FIIEGNDNGF EDVYEMMLDE LKEGGRVYLV YPVIEQSEQL 780 PQLRAAAADF EAISDRFQGY TCGLLHGRMK SDEKDEALRK FRSGETDILL STQVIEIGVD 840 VPDASMMVVM NAERFGIAQL HQLRGRVGRG VRKSKCILLA SSSSSLTRLM VLGKSSDGFY 900 LANMDLLLRG PGNLLGKKQS GHLPEFPIAR LEVDGNILQE AHLAALKVLG ASNDLEQFPL 960 LKAELSMRQP LNHVVYTISV ASLMLLRDFL SGCLLGMEQS HDVELGSNWV SMAVLPTAMG 1020 SSSLELTMSV PGFSSYPSFP NSSVRDLDIN QIPSLQGDQE EWMTAGMEDE EESSNGSGPP 1080 RKKLRLTKEQ SRLLEESFRQ NHTLNPKQKE ALAMQLKLRP RQVEVWFQNR RARSKLKQTE 1140 MECEYLKRWF GSLTEQNRRL QREVEELRAM KVSPPTVLYP HSCDPLPAST LTMCPRCERV 1200 TTTTTPDRDR GGGPTKTNNI PATAAPTLST KVATPAL

Sequence ? help Back to Top

Protein Sequence Length: 1237 aa Download sequence

MGRRRGREDL RVPNFQIHNQ PIIQAQNPYY DAIVSHRRVK SVEGLDLQGF HGRGSCRKPT  60
RMSGSWAKLA CCTWHPQSQL CNLDKVDIFY MMIDKEFPFQ CFSGNGLRSA IAFKAEKGYR  120
NALGRKMRFS NFLFSTVSRL CFRPKHSLVK NNLEEVDIFG IASISDRSKL LNKVSALVGY  180
DSLDDLIENE RAEKQSGSSP RVELYDGTIS FSERMLLSTQ SGEGFLSDTM CEEQSATVVI  240
EENSHQTVPV EESSNKVLLK SQNDTGSVQF SLDSSISCIP GITKKRCRQL EDCGFHTLRQ  300
LLHHFPRTYA DLQNAQMKID DGQYLIFIGK VLSSRGIKAS SSFSFIEVVV GCEIMDDEST  360
EHLNDSADSR RKKTISLHLK KFFRGARFTS LPFLRLVEGK HKEGDFVCVS GKVRTMPAKG  420
HYEMREYNID VLKDENEVSF HAKGRPYPIY PSKGGLDPNV LRDIIARVAQ VLAVDVDPIP  480
KNITQDFGLL GLHDAYKGIH EPKSMEEADL ARKRLIFDEF FYLQLARLYQ MLEGLGTQIE  540
KDGLLDKYRK PESSAAYMKE WSILTKKFSK ALPYTLTPSQ LTAVSEIIWD LRQPVPMNRL  600
LQGDVGCGKT VVAFLACMEV IGSGYQGLRT GEISMVVGTT SLISDKIEFF ALRIAVVDEQ  660
HRFGVIQRGR FNSKLYYTSI NSRMVAASSD VTSKGDNHMA PHVLAMSATP IPRTLALALY  720
GDMSLTQITD LPPGRIPVET FIIEGNDNGF EDVYEMMLDE LKEGGRVYLV YPVIEQSEQL  780
PQLRAAAADF EAISDRFQGY TCGLLHGRMK SDEKDEALRK FRSGETDILL STQVIEIGVD  840
VPDASMMVVM NAERFGIAQL HQLRGRVGRG VRKSKCILLA SSSSSLTRLM VLGKSSDGFY  900
LANMDLLLRG PGNLLGKKQS GHLPEFPIAR LEVDGNILQE AHLAALKVLG ASNDLEQFPL  960
LKAELSMRQP LNHVVYTISV ASLMLLRDFL SGCLLGMEQS HDVELGSNWV SMAVLPTAMG  1020
SSSLELTMSV PGFSSYPSFP NSSVRDLDIN QIPSLQGDQE EWMTAGMEDE EESSNGSGPP  1080
RKKLRLTKEQ SRLLEESFRQ NHTLNPKQKE ALAMQLKLRP RQVEVWFQNR RARSKLKQTE  1140
MECEYLKRWF GSLTEQNRRL QREVEELRAM KVSPPTVLYP HSCDPLPAST LTMCPRCERV  1200
TTTTTPDRDR GGGPTKTNNI PATAAPTLST KVATPAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1130	1138	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	8e-71	HD-ZIP family protein