PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP004581.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 122aa MW: 13281.1 Da PI: 6.8648 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.9 | 1.6e-13 | 33 | 57 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YPrGA++V C++C+tV PCP004581.1 33 CGSCRRLLKYPRGARHVECSCCQTV 57 ************************9 PP | |||||||
2 | zf-LSD1 | 48 | 2e-15 | 71 | 95 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GApsVRC++C++V PCP004581.1 71 CGSCAVLLMYPYGAPSVRCSSCHFV 95 ***********************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence |
MESKVEVDEA PQPELQSTAA QPSPPSEIAQ MVCGSCRRLL KYPRGARHVE CSCCQTVNFV 60 LEAHQVGQVK CGSCAVLLMY PYGAPSVRCS SCHFVTEVGE HNKRPPWSVQ QGQSPTPPNP 120 VD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21610.1 | 4e-46 | LSD family protein |