PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004466.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 319aa    MW: 37105.6 Da    PI: 7.1911
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004466.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.55.7e-074087255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++kGV    ++g W A+I+       ++r++lg f +++e a a++  + kl++
  PCP004466.1 40 KFKGVV-PQQNGHWGAQIYAD-----NQRIWLGAFKSEKESAMAYDSVAIKLRN 87
                 789996.566899****9994.....5**********99************997 PP
2B386.71.9e-27166258187
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f+k+ltpsdv+k++rlv pkk+a e+      +   +e+++l+++d+  r+W+++++y+++s+++vlt+GW++Fvk+n+Lk++D+++F+  ++
  PCP004466.1 166 FQKELTPSDVSKLNRLVSPKKYAVEYfpfenvEVHGTEDIELVFYDKFTRVWKFRYCYWRSSQSFVLTRGWNRFVKENNLKVNDVITFYACES 258
                  99**************************988843445899*************************************************6543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MISSAQRNLA LETSDSNETA FALLHPNKRA RHDNGVSFAK FKGVVPQQNG HWGAQIYADN  60
QRIWLGAFKS EKESAMAYDS VAIKLRNGKD LHRKFSMDQL HRSRASFPKP LLNRCNNEMI  120
RDGSYPSKFD AFVRSQTQSQ IEEMGKDTNN SIRVHGDGQV LCRQLFQKEL TPSDVSKLNR  180
LVSPKKYAVE YFPFENVEVH GTEDIELVFY DKFTRVWKFR YCYWRSSQSF VLTRGWNRFV  240
KENNLKVNDV ITFYACESDD QVIREEDRES TTFWLIYVMH SEGEINRSCL VEEANECEDL  300
QVQLELNLGE CSSYKVSNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-82RAV family protein