PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004106.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 572aa MW: 64671.6 Da PI: 7.2454

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004106.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89	5.3e-28	65	149	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m++++r+++lk+plWe+vs+k+ e g+ rs+k+Ckek+en+ k+++++k+g++++ ++ +t+++fd+lea PCP004106.1 65 RWPRQETVALLKIRSQMDDAFRDSSLKAPLWEDVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKQGRSGK--QEGKTYRFFDELEA 149 8******************************************************************96..55557****985 PP
2	trihelix	95.9	3.6e-30	406	490	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r+ ++ +++++ k+ lWee+s m++ g++rs+k+Ckekwen+nk+ykk+ke++k r se+s+tcpyf+ l+ PCP004106.1 406 RWPRVEVEALINLRTCLDVKYQESGPKGSLWEEISVGMKRLGYNRSAKRCKEKWENINKYYKKVKESSKTR-SEDSKTCPYFHLLD 490 8******************************************************************98.89999****886 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MPAVPAAVPD NSSTMFPSGG SSGVEAADTA EVVPEGSHES ETTNVLSNSV QEENKGDRNL 60 SGGNRWPRQE TVALLKIRSQ MDDAFRDSSL KAPLWEDVSR KLGELGYYRS AKKCKEKFEN 120 VYKYHRRTKQ GRSGKQEGKT YRFFDELEAF AHQNHHHPST IQPKPQVVLW PTMNNSHPNN 180 PSLVVPHVTI TTLPLSSTPS ILTPTNGSLP NGPQISPPHI TISPLNLSHQ NLNGFKPNLA 240 ANNLFSSSTS STASDEEFQV QPRNKRKRKW KYFFRRLTKD VLEKQEKLQE KFLEAIAKCE 300 HQRMAREEAW RMEEMARMSK EHEILAQERS LAAAKDAAVI EFLHKVSGQQ NLTNMQALEA 360 PSSQPQPMSV LMPPPLPAPV AVTRSSNFEV PKLNKGESPF PAGSTRWPRV EVEALINLRT 420 CLDVKYQESG PKGSLWEEIS VGMKRLGYNR SAKRCKEKWE NINKYYKKVK ESSKTRSEDS 480 KTCPYFHLLD ILHSKKNNKN DASYVEKPIA ETMRPLIKVQ PDQPVIEDIE RENGDRNGDD 540 EDGESTEEED RSDDQMEMVT NDKDSSMDMV DS

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MPAVPAAVPD NSSTMFPSGG SSGVEAADTA EVVPEGSHES ETTNVLSNSV QEENKGDRNL  60
SGGNRWPRQE TVALLKIRSQ MDDAFRDSSL KAPLWEDVSR KLGELGYYRS AKKCKEKFEN  120
VYKYHRRTKQ GRSGKQEGKT YRFFDELEAF AHQNHHHPST IQPKPQVVLW PTMNNSHPNN  180
PSLVVPHVTI TTLPLSSTPS ILTPTNGSLP NGPQISPPHI TISPLNLSHQ NLNGFKPNLA  240
ANNLFSSSTS STASDEEFQV QPRNKRKRKW KYFFRRLTKD VLEKQEKLQE KFLEAIAKCE  300
HQRMAREEAW RMEEMARMSK EHEILAQERS LAAAKDAAVI EFLHKVSGQQ NLTNMQALEA  360
PSSQPQPMSV LMPPPLPAPV AVTRSSNFEV PKLNKGESPF PAGSTRWPRV EVEALINLRT  420
CLDVKYQESG PKGSLWEEIS VGMKRLGYNR SAKRCKEKWE NINKYYKKVK ESSKTRSEDS  480
KTCPYFHLLD ILHSKKNNKN DASYVEKPIA ETMRPLIKVQ PDQPVIEDIE RENGDRNGDD  540
EDGESTEEED RSDDQMEMVT NDKDSSMDMV DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-93	Trihelix family protein