PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004009.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 324aa MW: 36275.5 Da PI: 4.5386

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.5e-19	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k PCP004009.1 89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWK 142 56689************************************************9 PP
2	HD-ZIP_I/II	128.7	2.4e-41	89	179	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+++qv++LE+sF+ e+kLeperKv la++Lglqprqva+WFqnrRAR+ktkqlEkdye L++++++lk++ e+L+ke+++L++e++ PCP004009.1 89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEELQANHNNLKADCESLSKENDKLKAEVT 179 9**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MSGGRVYGGG SSSGLSALFQ NQRGSERLDS LFLSGSSNSS SASFLGSRSM VSFEDVRGGS 60 GSNRSLFRQY EHEDNGDDDL DEYLHQPGKK RRLTADQVQF LEKSFDVENK LEPERKVLLA 120 KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY EELQANHNNL KADCESLSKE NDKLKAEVTV 180 LSDKLHLKEK EGGNSELSDT NRLSQEPPQK PIADTVSEGE VSKVSAVASK QEDLSSGRSD 240 IFDSVSSHYT DAVHSSLLEP GDSSYAFEPE QSDLSQDEED NFTKSLLPPY IFPKIEDVDY 300 SDTPANSCNY AFPVEDHAFW SWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	10	GGRVYGGG
2	137	145	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-43	HD-ZIP family protein