PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP003786.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 795aa    MW: 87356.4 Da    PI: 6.3918
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP003786.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182683457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  PCP003786.1 26 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 83
                 5789****************************************************97 PP
2START159.13.4e-501643712204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l++++
  PCP003786.1 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELIYTQ 260
                  7899******************************************************.7777777777***********999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    s++vR+ +lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  PCP003786.1 261 TYAPTTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNpasASQFVRGVMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 358
                  ***********************************988888878999*************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  +++++ a+l++ +
  PCP003786.1 359 AQRMTIAALRYIR 371
                  ********99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    
MAMVVAHHRE SSSGSSINKH LDAGKYVRYT SEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPRQI KVWFQNRRCR EKQRKESSRL QIVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TAPAATTDAS CDSLVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRSL  240
EVFTMFPAGN GGTIELIYTQ TYAPTTLAPA RDFWTLRYTT SLDNGSFVVC ERSLSGSGAG  300
PNPASASQFV RGVMLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
RMTIAALRYI RQIAQETSGE VVYSLGRQPA VLRTFSQRLI RGFNDAVNGF NDDGWSLVNC  420
DGAEDVIITV NSTKNLTSTS NHANSLALLG GVLCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKAGSYAY PGMRPTRFTG GQIIMPLGHT IEQEELLEVV RLEGHSLTQE  540
DAFASRDIHL LQICSGVDEN AAGACSELVF APIDEMFPDD APLLPSGFRI IPLDSKTSDS  600
KATLNTHRTL DLASSLEVGS TTSNAAGDLT TFHNTRSVLT IAFQFPLDNS LQENVANMAR  660
HYHVGGELLR PDSFGGDSML KHLWHHQDAI LCCSLKSMPV FTFANQAGLD MLETTLVALQ  720
DISLDKIFDE AGRKTLCADF SKLMNQGFAY LPAGICMSTM ARHVSYEQAI AWKVLAAEEN  780
SVHCLAFSFI NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein