PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003576.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 1250aa MW: 138161 Da PI: 5.1253

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003576.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	5e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp GfrF+Ptdeel+++yL+ k++g++ ++ vi+e+d++k+ePwdLp + +++++ ew+fF+++d+ky++g+r nrat +gyWkatgkd++++s + PCP003576.1 14 LPLGFRFRPTDEELIDYYLRSKINGNHGQV-AVIREIDVCKCEPWDLPdlSVIQTTDPEWFFFCPQDRKYPNGQRLNRATIKGYWKATGKDRQIKS-D 109 699**********************999.89**********96447778888**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + l+g+kktLvf++grapkg++t+Wvmheyr PCP003576.1 110 KILIGMKKTLVFHTGRAPKGKRTNWVMHEYRT 141 9***************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1250 aa Download sequence
MLVADMETLS MDSLPLGFRF RPTDEELIDY YLRSKINGNH GQVAVIREID VCKCEPWDLP 60 DLSVIQTTDP EWFFFCPQDR KYPNGQRLNR ATIKGYWKAT GKDRQIKSDK ILIGMKKTLV 120 FHTGRAPKGK RTNWVMHEYR TTQKELDGTN PGQSSFVLCR LFKKQDETIE DSNFDEADPT 180 VSSSTAALSS PQDVQSDHAP LPTSPSLERQ DERPLTKVEC TSADNCNAMG SDTLPPLPPI 240 EFPSNNCSGY DAEDQLNMPL GELNMFYDRP QEPLFSPLHS QMHAELGYYG RNDFSPPDDQ 300 DTYVSEFLSS IFNSSGEQID VDGRAAELPF EAELQNPVQP EGNIDRNGPS PLMSIPENYG 360 QSSRSEVTSN HLNAMINCDA AHLNAIISRD AGTEIRLRPR QTQNPTSAKS FVTQGDANRR 420 LLILTKFLQL QCSSRPEDRE IKPIAMEEIT NNKKKPIGAV ATDVISADID LPEKGTVPTR 480 PNLTTEGRIV TGKRVPSLFF KASPADMRSC SIANFLFVLL LLLTSLSLGT PHGAPDQTHY 540 AKELLSAAQQ DKNWLISIRR QIHENPELKF QEHNTSALLR RELDRLGIPY NYPIAQTGIV 600 AEIGSGSGPV VALRADMDAL PLQELVEWEH KSKVDGKMHG CGHDAHTTML LGAAKLLSQR 660 KDKLKGTVRL LFQPGEEGGA GASKMIKGGA LGEAKAIFGM HVDYTIPTGT VASIAGPLLA 720 AVSMFEAKIV GIGGHAAEPH NTADPILAAS FAILALQQLI SRETDPLHSQ VLSVTYVRGG 780 TASNVIPSYV VFGGTLRSLT TEGLYLLRRR LKEVIEGQAA VHRCNAYVDT KDEEYPPLPA 840 VVNDESLHMQ AQRVGKLLLG PENVKLCEKV MAGEDFAFYQ QFIPGIMLSI GIGNEEVGSV 900 HSPHSPYFFL DEDVLPIGAA LHAALAESYL DEHQHSEQAK AEPKPEEKAE EKVEEKKEEE 960 EKKEEPKPPS PFVLFVDLHC VGCAKKIERS IMKIRGVEGV VIDMAKNEVT IKGIVEPQAV 1020 CNKIMKKTKR KAKVLSPLPA AEGEPIPEVV ASQVSGLVNV ELEVNMHCEA CAEQLKKKIL 1080 KLRGVQSAVT DHSSGKVMVT GTIDGDKLVE YVYRRTKKQA RIVPQPEPEP EKKEDEKPAA 1140 EEAKPEEEKK EENAGKKEED KPAEGEGKKE EGGADGGESN NKEEEKGGEE NKEEGKKVEE 1200 MMSGSYINSG MDEEQMKRMM QYYYQPLYVI ERIPPPQLFS DENPNACCIS

Sequence ? help Back to Top

Protein Sequence Length: 1250 aa Download sequence

MLVADMETLS MDSLPLGFRF RPTDEELIDY YLRSKINGNH GQVAVIREID VCKCEPWDLP  60
DLSVIQTTDP EWFFFCPQDR KYPNGQRLNR ATIKGYWKAT GKDRQIKSDK ILIGMKKTLV  120
FHTGRAPKGK RTNWVMHEYR TTQKELDGTN PGQSSFVLCR LFKKQDETIE DSNFDEADPT  180
VSSSTAALSS PQDVQSDHAP LPTSPSLERQ DERPLTKVEC TSADNCNAMG SDTLPPLPPI  240
EFPSNNCSGY DAEDQLNMPL GELNMFYDRP QEPLFSPLHS QMHAELGYYG RNDFSPPDDQ  300
DTYVSEFLSS IFNSSGEQID VDGRAAELPF EAELQNPVQP EGNIDRNGPS PLMSIPENYG  360
QSSRSEVTSN HLNAMINCDA AHLNAIISRD AGTEIRLRPR QTQNPTSAKS FVTQGDANRR  420
LLILTKFLQL QCSSRPEDRE IKPIAMEEIT NNKKKPIGAV ATDVISADID LPEKGTVPTR  480
PNLTTEGRIV TGKRVPSLFF KASPADMRSC SIANFLFVLL LLLTSLSLGT PHGAPDQTHY  540
AKELLSAAQQ DKNWLISIRR QIHENPELKF QEHNTSALLR RELDRLGIPY NYPIAQTGIV  600
AEIGSGSGPV VALRADMDAL PLQELVEWEH KSKVDGKMHG CGHDAHTTML LGAAKLLSQR  660
KDKLKGTVRL LFQPGEEGGA GASKMIKGGA LGEAKAIFGM HVDYTIPTGT VASIAGPLLA  720
AVSMFEAKIV GIGGHAAEPH NTADPILAAS FAILALQQLI SRETDPLHSQ VLSVTYVRGG  780
TASNVIPSYV VFGGTLRSLT TEGLYLLRRR LKEVIEGQAA VHRCNAYVDT KDEEYPPLPA  840
VVNDESLHMQ AQRVGKLLLG PENVKLCEKV MAGEDFAFYQ QFIPGIMLSI GIGNEEVGSV  900
HSPHSPYFFL DEDVLPIGAA LHAALAESYL DEHQHSEQAK AEPKPEEKAE EKVEEKKEEE  960
EKKEEPKPPS PFVLFVDLHC VGCAKKIERS IMKIRGVEGV VIDMAKNEVT IKGIVEPQAV  1020
CNKIMKKTKR KAKVLSPLPA AEGEPIPEVV ASQVSGLVNV ELEVNMHCEA CAEQLKKKIL  1080
KLRGVQSAVT DHSSGKVMVT GTIDGDKLVE YVYRRTKKQA RIVPQPEPEP EKKEDEKPAA  1140
EEAKPEEEKK EENAGKKEED KPAEGEGKKE EGGADGGESN NKEEEKGGEE NKEEGKKVEE  1200
MMSGSYINSG MDEEQMKRMM QYYYQPLYVI ERIPPPQLFS DENPNACCIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	7e-91	NAC family protein