PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003293.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 331aa MW: 37460.2 Da PI: 4.3983

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003293.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.8e-19	87	141	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe+++++ e++ +LAk+lgL+ rqV +WFqNrR ++k+ PCP003293.1 87 KKRRLTANQVQFLEKNFESENKLEPERKVQLAKELGLQPRQVAIWFQNRRVRYKN 141 56689************************************************95 PP
2	HD-ZIP_I/II	126.4	1.3e-40	87	177	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+++qv++LE++Fe+e+kLeperKv+la+eLglqprqva+WFqnrR R+k+kqlEkdy++Lk++yd+lk + ++L ke+e+L++e++ PCP003293.1 87 KKRRLTANQVQFLEKNFESENKLEPERKVQLAKELGLQPRQVAIWFQNRRVRYKNKQLEKDYDSLKASYDKLKVDADNLLKENESLKNEID 177 9**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MTSGKLYGSS SSADMKVTFR NEKRPRSSDV LESLWIPNPS SSFYGSNSMV NFENVSGGDS 60 LDRPFFQPKE ENEDEDYDGS YLHQPGKKRR LTANQVQFLE KNFESENKLE PERKVQLAKE 120 LGLQPRQVAI WFQNRRVRYK NKQLEKDYDS LKASYDKLKV DADNLLKENE SLKNEIDSIK 180 DILLSREKGN PGKGDSDSQD AINTSDLEPR NAILNAGSEN VTKVAMVVCK QEDASSAKSD 240 VFDSDSPHCT ENHSSLLEPA DSSHVFEPAD QSDFSQDEDD DLGKTLLPPP PPQLLKLEDC 300 CYDYIPPPSS SNFGYIPLDD QDQQPYCFWP Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRVRYKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-42	HD-ZIP family protein